Return to main results Retrieve Phyre Job Id

Job DescriptionP02918
Confidence100.00%DateThu Jan 5 10:57:34 GMT 2012
Rank22Aligned Residues318
% Identity22%Templated1pyya4
SCOP infobeta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase
Resolution2.42

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   290.........300.........310.........320.........330.........340.........350.........360.........
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  TITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNNKITDTLKALPTYGPLLPAAVTSANPQQATAMLADG
Query Conservation 


  

  

 

   
     
                                        
               
Alig confidence 























........................................................
Template Conservation 


   
   
  
          ........................................................
Template Sequence  TISSPLQSFMETQMDAFQEKVKGK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 




S........................................................
Template Predicted Secondary structure 






........................................................
Template SS confidence 















































































   264.....270.........280.......
 
   370.........380.........390.........400.........410.........420.........430.........440.........
Predicted Secondary structure 




















































Query SS confidence 















































































Query Sequence  STVALSMEGVRWARPYRSDTQQGPTPRKVTDVLQTGQQIWVRQVGDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFN
Query Conservation                                     

                   
 
 



  

 


 


    
Alig confidence  ........................................................























Template Conservation  ........................................................    

 
  

 



 
 
 

Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YMTATLVSAKTGEILATTQRPTFD
Template Known Secondary structure  ........................................................TTTTS


Template Predicted Secondary structure  ........................................................








Template SS confidence 















































































   288.290.........300.........310.
 
   450... ......460.........470......... 480.........490.........500.........510........
Predicted Secondary structure 



..........











.























Query SS confidence 



. . . . . . . . . .

























.






































Query Sequence  QSKF. . . . . . . . . . NRATQALRQVGSNIKPFLYTAAMDKG. LTLASMLNDVPISRWDASAGSDWQPKNSPPQYAGPIRLR
Query Conservation      ..........


 

 








  





 
. 
  
   
 
             
 
      
 


 
Alig confidence 



..........

























.













..






















Template Conservation   
            
 
      





  
 




 
               ..          
      
  

 
Template Sequence  ADTKEGITEDFVWRDILYQSNYEPGSAFKVMMLAAAIDNNTFPGGEVFNSSELKI. . ADATIRDWDVNEGLTGGRMMTFS
Template Known Secondary structure  TTT
TT

TT






B

GGGGTT


TT



..TT

TTT

S
Template Predicted Secondary structure 
































..












Template SS confidence 















































































   312.......320.........330.........340.........350.........360...... ...370.........380.........
 
   519520.........530.........540.........550......... 560.... .....570.........580.
Predicted Secondary structure 















................




.




Query SS confidence 








































. . . . . . . . . . . . . . . .




.
















Query Sequence  QGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTE. . . . . . . . . . . . . . . . SLALG. SASFTPMQVARGYAVMA
Query Conservation   

  
 
   
 
   

           
          ................




.   



 

 


  
Alig confidence 








































................




.
















Template Conservation   

  
 
     
   

       
   
    
                         


   


 

  




Template Sequence  QGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFGVPTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIA
Template Known Secondary structure  TT

TTTTS



S
SS



B


SSGGGT
S
BB
Template Predicted Secondary structure 

































Template SS confidence 















































































   390.........400.........410.........420.........430.........440.........450.........460.........
 
   582.......590.........600.........610.........620.........630.........640.........650.........660.
Predicted Secondary structure 

































































Query SS confidence 















































































Query Sequence  NGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDTQKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQAL
Query Conservation 
 
    
  
  
 
  
 

    
                                                     
Alig confidence 





























..................................................
Template Conservation 


    
  
  
 
  
           ..................................................
Template Sequence  NDGVMLEPKFISAIYDPNDQTARKSQKEIV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTT


B


GGGT



..................................................
Template Predicted Secondary structure 















..................................................
Template SS confidence 















































































   470.........480.........490.........
 
   662.......670.........680.........690....... ..700.........710.........720 ....
Predicted Secondary structure 




















....













.............



Query SS confidence 



































. . . .






















. . . . . . . . . . . . .



Query Sequence  VAKTGAQEYAPHVINTPLAFLIKSALNTNIFGEPGW. . . . QGTGWRAGRDLQRRDIGGKTGTT. . . . . . . . . . . . . NSSK
Query Conservation              


   
  
   
  

      .... 


  
        







.............    
Alig confidence  ..........

























....







.













.............



Template Conservation  ..........    
   
  
   
  

           

     .   
  








                
Template Sequence  . . . . . . . . . . GNPVSKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTV. TVPGQNVALKSGTAQIADEKNGGYLVGLTDY
Template Known Secondary structure  ..........

S

TTT
TTTTTTSS.

TTS


B
SSSSSB

STT
Template Predicted Secondary structure  ..........


















.




















Template SS confidence 















































































   500.........510.........520.........530....... ..540.........550.........560........
 
   725....730. ........740.........750.........760.........770.........780.........790.........
Predicted Secondary structure 
....















































Query SS confidence 






. . . .



































































Query Sequence  DAWFSGY. . . . GPGVVTSVWIGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQPLTPPPGI
Query Conservation 






....

    




 

                       
   
 


  

           
  
  
Alig confidence 






....














.................



































Template Conservation    

 
  
   
     
 
     .................     
   
 

   
      
           
Template Sequence  IFSAVSMSPAENPDFILYVTVQQPEH. . . . . . . . . . . . . . . . . YSGIQLGEFANPILERASAMKDSLNLQTTAKALEQV
Template Known Secondary structure  SSSS
SS
SS.................

TTGGG
TTS

STTTT
Template Predicted Secondary structure 








.................
















Template SS confidence 














































































   569570.........580.........590.... .....600.........610.........620.........630
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions