Job Description P02918 Confidence 99.56% Date Thu Jan 5 10:57:34 GMT 2012 Rank 56 Aligned Residues 227 % Identity 15% Template c3qhyA_ PDB info PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:beta-lactamase; PDBTitle: structural, thermodynamic and kinetic analysis of the picomolar2 binding affinity interaction of the beta-lactamase inhibitor protein-3 ii (blip-ii) with class a beta-lactamases Resolution 2.06 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.			480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		A	L	V	S	I	N	P	Q	N	G	A	V	M	A	L	V	G	G	F	D	F	N	Q	S	K	F	N	R	A	T	Q	A	L	R	Q	V	G	S	N	I	K	P	F	L	Y	T	A	A	M	D	K	G	.	.	L	T	L	A	S	M	L	N	D	V	P	I	S	R	W	D	A	S	A	G	S	D	W	Q	P	K
Query Conservation																																																						.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.																								.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.
Template Sequence		G	V	Y	A	I	D	T	G	T	N	Q	T	I	A	Y	R	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	F	A	F	A	S	T	Y	K	A	L	A	A	G	V	L	L	Q	Q	N	S	T	K	K	L	D	E	V	I	T	Y	T	K	E	D	L	V	D	Y	S	P	V	T	E	K	.	.	.
Template Known Secondary structure								T	T	T							S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G													S		G	G	G	G	G	S						G	G	G			S	S		T	T	T	T	T	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.														.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.		.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.							.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.																				.	.	.	.	.	.
Query SS confidence																																		.																				.	.	.	.	.	.
Query Sequence		N	S	P	P	Q	Y	A	G	P	I	R	L	R	Q	G	L	G	Q	S	K	N	V	V	M	V	R	A	M	R	A	M	G	.	V	D	Y	A	A	E	Y	L	Q	R	F	G	F	P	A	Q	N	I	V	.	.	.	.	.	.	H	T	E	S	L	A	L	G	S	A	S	F	T	P	M	Q	V	A	R	G	Y	A
Query Conservation																																		.																				.	.	.	.	.	.
Alig confidence																																		.																				.	.	.	.	.	.
Template Conservation
Template Sequence		H	V	D	T	G	M	T	L	G	E	I	A	E	A	A	V	R	Y	S	D	N	T	A	G	N	I	L	F	H	K	I	G	G	P	K	G	Y	E	K	A	L	R	Q	M	G	D	R	V	T	M	S	D	R	F	E	T	E	L	N	E	A	I	P	G	D	I	R	D	T	S	T	A	K	A	I	A	T	N	L	K
Template Known Secondary structure		S	T	T	T																											T	T												T	T			S		B					T	T	G	G	G				T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	A	N	G	G	F	L	V	D	P	W	F	I	S	K	I	E	N	D	Q	G	G	V	I	F	E	A	K	P	K	V	A	C	P	E	C	D	I	P	V	I	Y	G	D	T	Q	K	S	N	V	L	E	N	N	D	V	E	D	V	A	I	S	R	E	Q	Q	N	V	S	V	P	M	P	Q	L	E	Q	A	N
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	F	T	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.
		659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720		.	.	.	.	.	.	.	.	.	730	.	.	.	.
Predicted Secondary structure																																																																.															.	.	.
Query SS confidence																																																																.															.	.	.
Query Sequence		Q	A	L	V	A	K	T	G	A	Q	E	Y	A	P	H	V	I	N	T	P	L	A	F	L	I	K	S	A	L	N	T	N	I	F	G	E	P	G	W	Q	G	T	G	W	R	A	G	R	D	L	Q	R	R	D	I	G	G	K	T	G	T	T	.	N	S	S	K	D	A	W	F	S	G	Y	G	P	G	.	.	.
Query Conservation																																																																.															.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.																								.															.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	L	P	N	H	K	R	N	I	L	T	K	W	M	K	G	N	A	.	.	.	.	.	.	T	G	D	K	L	I	R	A	G	V	P	T	N	W	V	V	A	D	K	S	G	A	G	S	Y	G	T	R	N	D	I	A	I	V	W	P	P	N	R	A	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S													B	S		G	.	.	.	.	.	.	G	G	T	T	T					S		T	T	S										T	T	T											T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template SS confidence
																197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.							.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	T	S	V	W	I	G	F	D	D	H	R	R	N	L	G	H	T	T	A	S	G	A	I	K	D	Q	I	S	G	Y	E	G	G	A	K	S	A	Q	P	A	W	D	A	Y	M	K	A
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	I	A	I	L	S	S	K	D	E	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	Y	D	N	Q	L	I	A	E	A	A	E	V	I	V	N	A
Template Known Secondary structure											S	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.																			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions