Return to main results Retrieve Phyre Job Id

Job DescriptionP02918
Confidence99.33%DateThu Jan 5 10:57:34 GMT 2012
Rank62Aligned Residues225
% Identity17%Templatec3p09B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:beta-lactamase; PDBTitle: crystal structure of beta-lactamase from francisella tularensis
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   428.430.........440.........450.........460.........470....... .. 480.........490.........500...
Predicted Secondary structure 






















...

.













Query SS confidence 

















































. . .

.























Query Sequence  ALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMD. . . KG. LTLASMLNDVPISRWDASAGSDWQ
Query Conservation 
 



  

 


 


        


 

 








  





... 
. 
  
   
 
             
Alig confidence 













................



















...

.






















.
Template Conservation   
 
 
  
   
 ................    
 

  

      
     
   
   
 
              .
Template Sequence  GIYTLNTDNIKYNE. . . . . . . . . . . . . . . . SYHFPICSVFKFLLVGAILDYDXHNQGFLDKKIPINQDDIGKLGYAPIT.
Template Known Secondary structure 



ST................TS

GGGSTTGGG


TT



TTT.
Template Predicted Secondary structure 




................





















.
Template SS confidence 















































































   37..40.........50 .........60.........70.........80.........90.........
 
   504.....510.........520.........530...... ...540.........550....... ..560.........570......
Predicted Secondary structure 












.










......











Query SS confidence 
































.




















. . . . . .


















Query Sequence  PKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAM. GVDYAAEYLQRFGFPAQNIVH. . . . . . TESLALGSASFTPMQVARG
Query Conservation 
 
      
 


  

  
 
   
 
   
.
           
        ......  




   



 

 
Alig confidence  .































.




















......


















Template Conservation  .        
   
       




  
     
   
      

   
                  
 


 
   
Template Sequence  . AKNVGKTLTISQLNYAAILSDSPASNILVRELGGLQNLNKFIKKLGDNDTIITADEPEINYTQPHSNINKTTPKAITKD
Template Known Secondary structure  .GGGTTSTT
T
TT

S
B



TTGGG


TT

TT
Template Predicted Secondary structure  .
































Template SS confidence 















































































   103......110.........120.........130.........140.........150.........160.........170.........180.
 
   577..580.........590.........600.........610.........620.........630.........640.........650......
Predicted Secondary structure 




























































Query SS confidence 















































































Query Sequence  YAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDTQKSNVLENNDVEDVAISREQQNVSVPMPQLEQ
Query Conservation 

  

 
    
  
  
 
  
 

    
                                                
Alig confidence 






.........................................................................
Template Conservation 
  
   .........................................................................
Template Sequence  IYKLAFG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S.........................................................................
Template Predicted Secondary structure 
.........................................................................
Template SS confidence 















































































   182......
 
   657..660.........670.........680.........690.........700.........710.........720.........730..
Predicted Secondary structure 













































....
Query SS confidence 











































































. . . .
Query Sequence  ANQALVAKTGAQEYAPHVINTPLAFLIKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTTNSSKDAWFSGYG. . . .
Query Conservation                   


   
  
   
  

       


  
        







    







....
Alig confidence  ................

















......



































....
Template Conservation  ................              
   ......      
    
    
  


     
   
 


    
Template Sequence  . . . . . . . . . . . . . . . . NILDKKHKDIFIKYLQDN. . . . . . NTGANRIAFSXPKDWIIGDKTGTCGQYAATNDVAIIWPKN
Template Known Secondary structure  ................SSS

......
S
TTTGGGGS
TTS
SSTT

TT
Template Predicted Secondary structure  ................





......























Template SS confidence 















































































   189190.........200...... ...210.........220.........230.........240......
 
   733......740.........750.........760.........770.........780......
Predicted Secondary structure  .


































Query SS confidence  .





















































Query Sequence  . PGVVTSVWIGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLE
Query Conservation  .
    




 

                       
   
 


  

     
Alig confidence  .














.....................

















Template Conservation 
  




        .....................        
  
   
  
Template Sequence  QQPIALGILYTNPNDK. . . . . . . . . . . . . . . . . . . . . NAPSNEEIIQQAAKLIAN
Template Known Secondary structure  S


TT
T.....................T



Template Predicted Secondary structure 







.....................
Template SS confidence 






















































   247..250.........260.. .......270.........280
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions