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Job DescriptionP02918
Confidence100.00%DateThu Jan 5 10:57:34 GMT 2012
Rank34Aligned Residues224
% Identity20%Templatec3hbrD_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:oxa-48; PDBTitle: crystal structure of oxa-48 beta-lactamase
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  RQVGDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMDKG. LTLASMLNDV
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Template Sequence  QENKSWNAHFTEHKSQGVVVLWNEQQGFT. . . . . . . . . . . NNLKRANQA. FLPASTFIP. NSLIALDLGVVKDEHQVFKW
Template Known Secondary structure 
GGGGGGTGGGT



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TTGGG
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GGG

.TSS
STT

B

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   26...30.........40.........50.... .....60... ......70.. .......80.........90..
 
   490.........500.........510.........520.........530.........540.........550.........560... ....
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Query Sequence  PISRWDASAGSDWQPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLAL. . GSAS
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Template Sequence  DGQT. . . . . . . . . . . . RDIATWNRDHNLITAMKYSVVPVYQEFARQIGEARMSKMLHAFDYGNEDISGNVDSFWLDGGIR
Template Known Secondary structure 
S

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SSGGGSS
B
TT
T
TT



S
TTTSS

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   96... 100.........110.........120.........130.........140.........150.........160...
 
   568.570.........580.........590.........600.........610.........620.........630.........640.......
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Query Sequence  FTPMQVARGYAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDTQKSNVLENNDVEDVAISREQQNV
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Template Sequence  ISATEQISFLRKLYHNK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
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   164.....170.........180
 
   648.650.........660.........670.........680.........690.........700.........710.........720. ....
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Query Sequence  SVPMPQLEQANQALVAKTGAQEYAPHVINTPLAFLIKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTTN. . SSKD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . LHVSERSQRIVKQAMLTEA. . . . . . . . . . . . . . . . NGDYIIRAKTGYSTRIEPKI
Template Known Secondary structure  .........................SSS
T................
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SSSS
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   181........190......... 200.........210.........
 
   726...730. ........740.........750.........760.........770.........780....
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Query Sequence  AWFSGY. . . . GPGVVTSVWIGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAV
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Template Sequence  GWWVGWVELDDNVWFFAMNMDMPTS. . . . . . . . . . . . . . . . . . . . . DGLGLRQAITKEVLKQE
Template Known Secondary structure 
SS

SSG.....................GGTTT
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   220.........230.........240.... .....250.........260.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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