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Job DescriptionP02918
Confidence100.00%DateThu Jan 5 10:57:34 GMT 2012
Rank32Aligned Residues228
% Identity24%Templatec2jc7A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:beta-lactamase oxa-24; PDBTitle: the crystal structure of the carbapenemase oxa-24 reveals2 new insights into the mechanism of carbapenem-hydrolysis
Resolution2.5 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   296...300.........310.........320.........330.........340.........350.........360.........370.....
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Query Sequence  QQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNNKITDTLKALPTYGPLLPAAVTSANPQQATAMLADGSTVALS
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Template Sequence  SQQHEKAIKSYFDEA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T.................................................................
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   35....40.........
 
   376...380.........390.........400.........410.........420.........430.........440.........450.....
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Query Sequence  MEGVRWARPYRSDTQQGPTPRKVTDVLQTGQQIWVRQVGDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQSKFNR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QTQGVIIIKEGKNLSTYG. . . . . . . . . NALAR
Template Known Secondary structure  ................................................TS
TT.........S
GGG
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   50.........60....... ..70..
 
   456...460.........470......... 480.........490.........500.........510.........520.........530....
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Query Sequence  ATQALRQVGSNIKPFLYTAAMDKG. LTLASMLNDVPISRWDASAGSDWQPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMR
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Template Sequence  ANK. EYVPASTFKMLNALIGLENHKATTNEIFKWDGKKR. . . . . . . . . . . . . TYPMWEKDMTLGEAMALSAVPVYQELAR
Template Known Secondary structure  GG
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B

GGGGTTS

SS

B


SS

.............SSGGGSS
B
T
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   73.. ....80.........90.........100.........110 .........120.........130........
 
   535....540.........550.........560... ......570.........580.........590.........600.........610..
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Query Sequence  AMGVDYAAEYLQRFGFPAQNIVHTESLAL. . GSASFTPMQVARGYAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVAC
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Template Sequence  RTGLELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHNR. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
T
TT


TT
TTTSS

B
TT
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   139140.........150.........160.........170.........180.........190
 
   613......620.........630.........640.........650.........660.........670.........680.........690..
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Query Sequence  PECDIPVIYGDTQKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQALVAKTGAQEYAPHVINTPLAFLIKSALNTNIF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LPFKLETQEEVKKMLLIKE.
Template Known Secondary structure  ............................................................SSS
TT.
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   191........200.........
 
   693......700.........710......... 720.........730.... .....740.........750.........760.....
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Query Sequence  GEPGWQGTGWRAGRDLQRRDIGGKTGT. . TNSSKDAWFSGYGPG. . . . . VVTSVWIGFDDHRRNLGHTTASGAIKDQISG
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Template Sequence  . . . . . . . . . . . . . . . VNGSKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLNLEMKEG. . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ...............TT
SSSS
TTS

TT...................
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   210.........220.........230.........240.........250.....
 
   766...770.........780....
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Query Sequence  YEGGAKSAQPAWDAYMKAV
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Template Conservation  ..     
  
   

  
Template Sequence  . . MSGSIRNEITYKSLENL
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TTT
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   256...260.........270..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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