Job Description P02918 Confidence 98.92% Date Thu Jan 5 10:57:34 GMT 2012 Rank 65 Aligned Residues 235 % Identity 20% Template c2bcfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable d-alanyl-d-alanine carboxypeptidase PDBTitle: crystal structure of a evolved putative penicillin-binding2 protein homolog, rv2911, from mycobacterium tuberculosis. Resolution 2.30 Å

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		422	.	.	.	.	.		.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		V	P	E	V	N	S	.	A	L	V	S	I	N	P	Q	N	G	A	V	M	A	L	V	G	G	F	D	F	N	Q	S	K	F	N	R	A	T	Q	A	L	R	Q	V	G	S	N	I	K	P	F	L	Y	T	A	A	M	D	K	G	L	T	L	A	S	M	L	N	D	V	P	I	S	R	W	D	A	S	A	G	S
Query Conservation								.
Alig confidence								.																			.	.	.	.	.	.	.	.	.	.	.	.																						.																				.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.																						.																				.	.
Template Sequence		I	P	D	G	P	A	Q	T	W	I	V	A	D	L	D	S	G	Q	V	L	A	G	R	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	N	V	A	H	P	P	A	S	T	I	K	V	L	L	A	L	V	A	L	D	E	.	L	D	L	N	S	T	V	V	A	D	V	A	D	T	Q	A	E	C	N	.	.
Template Known Secondary structure						S		S							T	T	T								S	T	.	.	.	.	.	.	.	.	.	.	.	.	T			B			G	G	G													.			T	T							T	G	G	G			S	S		.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.																						.																				.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.													.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.					.	.	.	.	.	.	.	530	.	.	.	.	.	.	.						.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.			.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.																.	.	.	.	.																										.	.
Query SS confidence																								.	.	.	.																.	.	.	.	.																										.	.
Query Sequence		D	W	Q	P	K	N	S	P	P	Q	Y	A	G	P	I	R	L	R	Q	G	L	G	.	.	.	.	Q	S	K	N	V	V	M	V	R	A	M	R	A	M	G	.	.	.	.	.	V	D	Y	A	A	E	Y	L	Q	R	F	G	F	P	A	Q	N	I	V	H	T	E	S	L	A	.	.	L	G	S	A	S	F	T
Query Conservation																								.	.	.	.																.	.	.	.	.																										.	.
Alig confidence		.	.	.	.	.																		.	.	.	.																.	.	.	.	.																										.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	C	V	G	V	K	P	G	R	S	Y	T	V	R	Q	L	L	D	G	L	L	L	V	S	G	N	D	A	A	N	T	L	A	H	X	L	G	G	Q	D	V	T	V	A	K	X	N	A	K	A	A	T	L	G	A	T	S	T	H	A	T	T	P	S	G	L	D	G	P	G	G	S	G	A	S	T
Template Known Secondary structure		.	.	.	.	.						T	T															S													T	T																	T		T	T		B		S	S	S	S	S	S		B	T	T	B	S		B	B
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	Q	V	A	R	G	Y	A	V	M	A	N	G	G	F	L	V	D	P	W	F	I	S	K	I	E	N	D	Q	G	G	V	I	F	E	A	K	P	K	V	A	C	P	E	C	D	I	P	V	I	Y	G	D	T	Q	K	S	N	V	L	E	N	N	D	V	E	D	V	A	I	S	R	E	Q	Q	N	V	S	V
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	H	D	L	V	V	I	F	R	A	A	X	A	N	P	V	F	A	Q	I	I	A	E	P	S	A	X	F	P	S	D	E	Q	L	I	V	N	Q	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															S										S																T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	P	Q	L	E	Q	A	N	Q	A	L	V	A	K	T	G	A	Q	E	Y	A	P	H	V	I	N	T	P	L	A	F	L	I	K	S	A	L	N	T	N	I	F	G	E	P	G	W	Q	G	T	G	W	R	A	G	R	D	L	Q	R	R	D	I	G	G	K	T	G	T	T	N	S	S	K	D	A	W	F	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	Q	R	Y	P	G	A	I	G	G	K	T	G	Y	T	N	A	A	R	K	T	F	V	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	T	T										T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																									219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		730	.	.	.				.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		G	Y	G	P	.	.	.	G	V	V	T	S	V	W	I	G	F	D	D	H	R	R	N	L	G	H	T	T	A	S	G	A	I	K	D	Q	I	S	G	Y	E	G	G	A	K	S	A	Q	P	A	W	D	A	Y	M	K	A	V	L	E	G	V	P	E	Q	P	L
Query Conservation						.	.	.
Alig confidence						.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	A	R	G	G	R	R	L	V	I	A	X	X	Y	G	L	V	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	P	T	Y	W	D	Q	A	A	T	L	F	D	W	G	F	A	L	N	P	Q	A	S	V
Template Known Secondary structure						T	T														T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																		S		T	T			S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.																							.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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