Job Description P02918 Confidence 97.91% Date Thu Jan 5 10:57:34 GMT 2012 Rank 75 Aligned Residues 139 % Identity 13% Template c1tvfA_ PDB info PDB header:penicillin binding Chain: A: PDB Molecule:penicillin binding protein 4; PDBTitle: crystal structure of penicillin-binding protein 4 (pbp4)2 from staphylococcus aureus Resolution 2.00 Å

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		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.				.	.	.		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.				.
Query SS confidence																																																								.	.	.				.
Query Sequence		P	E	V	N	S	A	L	V	S	I	N	P	Q	N	G	A	V	M	A	L	V	G	G	F	D	F	N	Q	S	K	F	N	R	A	T	Q	A	L	R	Q	V	G	S	N	I	K	P	F	L	Y	T	A	A	M	.	.	.	D	K	G	.	L	T	L	A	S	M	L	N	D	V	P	I	S	R	W	D	A	S	A
Query Conservation																																																								.	.	.				.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.				.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	Y	E	P	T	S	A	V	N	V	S	Q	T	G	Q	L	L	Y	Q	Y	N	I	.	.	.	.	.	.	.	.	.	.	.	.	D	T	K	W	N	P	A	S	M	T	K	L	M	T	M	Y	L	T	L	E	A	V	N	K	G	Q	L	S	L	D	D	T	V	T	M	T	N	K	E	Y	I	M	S	T	L
Template Known Secondary structure		G	G	G			S							T	T	S	B						S	T	.	.	.	.	.	.	.	.	.	.	.	.	T			B			G	G	G															T	T	S	S		T	T													T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.													.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520					.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.							.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure																								.	.	.	.																		.	.	.	.	.	.																									.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.																		.	.	.	.	.	.																									.	.	.	.	.	.	.
Query Sequence		G	S	D	W	Q	P	K	N	S	P	P	Q	Y	A	G	P	I	R	L	R	Q	G	.	.	.	.	L	G	Q	S	K	N	V	V	M	V	R	A	M	R	A	M	G	.	.	.	.	.	.	V	D	Y	A	A	E	Y	L	Q	R	F	G	F	P	A	Q	N	I	V	H	T	E	S	L	.	.	.	.	.	.	.
Query Conservation																								.	.	.	.																		.	.	.	.	.	.																									.	.	.	.	.	.	.
Alig confidence					.	.	.																	.	.	.	.																		.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Conservation					.	.	.
Template Sequence		P	E	L	.	.	.	S	N	T	K	L	Y	P	G	Q	V	W	T	I	A	D	L	L	Q	I	T	V	S	N	S	S	N	A	A	A	L	I	L	A	K	K	V	S	K	N	T	S	D	F	V	D	L	M	N	N	K	A	K	A	I	G	M	K	N	T	H	F	V	N	P	T	G	A	E	N	S	R	L	R	S
Template Known Secondary structure		T	T	S	.	.	.							T	T															S														S	S	S															T	T		T	T		B		S	S	S	S	S	S						G	G
Template Predicted Secondary structure					.	.	.
Template SS confidence
		113	.	.				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
									562	.	.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	A	L	G	S	A	S	F	T	P	M	Q	V	A	R	G
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	A	P	T	K	Y	K	D	Q	E	R	T	V	T	T	A	R	D	Y	A	I	L
Template Known Secondary structure		G	S		G	G	G	T	T					B	B
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions