Job Description P0A6R0 Confidence 99.94% Date Thu Jan 5 11:03:43 GMT 2012 Rank 54 Aligned Residues 299 % Identity 20% Template c2vz8B_ PDB info PDB header:transferase Chain: B: PDB Molecule:fatty acid synthase; PDBTitle: crystal structure of mammalian fatty acid synthase Resolution 3.2 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.																													.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	G	T	G	S	Y	L	P	E	Q	V	R	T	N	A	D	L	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	V	D	T	S	D	E	W	I	V	T	R	T	G	I	R	E	R	H	I	A	A	P	N	E	T	V	S	T	M	G	F
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation													.																																																								.
Template Sequence		I	A	G	M	S	G	K	L	P	E	S	.	E	N	L	E	E	F	W	A	N	L	I	G	G	V	D	M	V	T	A	D	D	R	R	W	K	A	G	L	Y	G	L	P	R	R	M	G	K	L	K	D	L	S	R	F	D	A	S	F	F	G	V	H	S	K	Q	.	A	N	T	M	D	P	Q	L	R	M	L	L
Template Known Secondary structure									B	T	T	B	.	S	S										T	T								S	S	S	S		T	T	G	G	G			S						S		S	S				T	T	T	T	T						.			T	S
Template Predicted Secondary structure													.																																																								.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.																				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	A	T	R	A	I	E	M	A	G	I	E	K	D	Q	I	G	.	.	.	.	L	I	V	V	A	T	T	S	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	F	P	S	A	A	C	Q	I	Q	S	M	L	G	I	K	G	C	P	A	F	D	V	A	A	A	C	A
Query Conservation																				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																																																							.
Template Sequence		E	V	T	Y	E	A	I	V	D	G	G	I	N	P	A	S	L	R	G	T	S	T	G	V	W	V	G	V	S	S	S	D	A	S	E	A	L	S	R	D	P	E	T	L	V	G	Y	S	M	I	G	C	Q	R	A	M	M	A	N	R	L	S	F	F	F	D	F	K	G	.	P	S	I	T	I	D	T	A	C	S
Template Known Secondary structure									G	G	G	T			G	G	G	G	T	T		S																T	T			S	S	S			G	G	G	G	G	G	T	S	T	T											T			S	.								T	T	S
Template Predicted Secondary structure																																																																							.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.										.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.
Query Sequence		G	F	T	Y	A	L	S	V	A	D	Q	Y	V	K	S	G	A	V	K	Y	A	L	V	V	G	S	D	V	L	.	.	.	.	.	.	.	.	.	A	R	T	C	D	P	T	D	R	G	T	I	I	I	F	G	D	G	A	G	A	A	V	L	A	A	S	E	E	P	G	I	I	S	T	H	L	H	A	D	G	S
Query Conservation																															.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.																																								.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		S	S	L	L	A	L	Q	S	A	Y	Q	A	I	R	G	G	E	C	S	A	A	V	V	G	G	L	N	V	L	L	K	P	N	S	S	L	Q	F	M	K	L	G	M	L	S	Q	D	G	T	C	R	S	F	D	A	E	G	T	G	Y	C	R	A	E	A	V	V	A	V	L	L	T	K	K	S	L	A	.	.	.
Template Known Secondary structure		T														T	S	S		S																						T	T		B		T	T		S			S	S	B	T	T				B		B	B											G	G	G		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250						.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																																		.	.	.	.	.
Query SS confidence																			.																																																		.	.	.	.	.
Query Sequence		Y	G	E	L	L	T	L	P	N	A	D	R	V	N	P	E	N	.	S	I	H	L	T	M	A	G	N	E	V	F	K	V	A	V	T	E	L	A	H	I	V	D	E	T	L	A	A	N	N	L	D	R	S	Q	L	D	W	L	V	P	H	Q	A	N	L	R	I	.	.	.	.	.	I	S	A	T	A	K	K	L
Query Conservation																			.																																																		.	.	.	.	.
Alig confidence		.																	.											.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation		.																												.	.	.	.	.	.
Template Sequence		.	R	R	V	Y	A	T	I	L	N	A	G	T	N	T	D	G	S	K	E	Q	G	V	T	F	P	S	G	.	.	.	.	.	.	D	V	Q	E	Q	L	I	R	S	L	Y	A	P	A	G	P	D	P	E	S	L	E	Y	I	E	A	H	G	T	G	T	K	V	G	D	P	Q	E	L	N	G	I	V	N	A	L
Template Known Secondary structure		.	S			S															T	T		S	S	S				.	.	.	.	.	.									T	T	S	G	G	G	S	S		T	T	S												T	T
Template Predicted Secondary structure		.																												.	.	.	.	.	.
Template SS confidence
			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.							.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		259	260	.	.	.	.	.	.				.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.																				.	.	.	.														.	.	.	300	.	.	.
Predicted Secondary structure										.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	M	S	M	D	N	V	V	.	.	.	V	T	L	D	R	H	G	N	T	S	A	A	S	V	P	C	A	L	D	E	A	V	R	D	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	V	L	L	E	A
Query Conservation										.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	A	T	R	R	E	P	L	L	I	G	S	T	K	S	N	M	G	H	P	E	P	A	S	G	V	A	A	L	I	K	V	L	L	S	L	E	H	G	V	W	A	P	N	L	H	Y	H	T	P	N	P	E	I	P	A	L	Q	D	G	R	L	Q	V	V	D	R	P	L	P	I	R	G	G	N	V	G	I	N	S
Template Known Secondary structure			S		S	S	S							S						B		G	G	G														T	T	T						S	S			S	B		T	T	S	S	S	S	S	S	S	S						S						S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	G	G	F	T	W	G	S	A	L	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	G	F	G	G	S	N	V	H	V	I	L	Q
Template Known Secondary structure				T	T	T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions