Job Description P0A6R0 Confidence 100.00% Date Thu Jan 5 11:03:43 GMT 2012 Rank 24 Aligned Residues 312 % Identity 19% Template c2v4wB_ PDB info PDB header:transferase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa synthase, PDBTitle: crystal structure of human mitochondrial 3-hydroxy-3-2 methylglutaryl-coenzyme a synthase 2 (hmgcs2) Resolution 1.70 Å

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		1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		M	Y	.	.	T	K	I	I	G	T	G	S	Y	L	P	E	Q	V	R	T	N	A	D	L	E	K	M	V	D	T	S	D	E	W	I	V	T	R	T	G	I	R	E	R	H	I	A	A	P	N	E	T	V	S	T	M	G	F	E	A	A	T	R	A	I	E	M	A	G	I	E	K	D	Q	I	G	L	I	V	V
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		M	P	K	D	V	G	I	L	A	L	E	V	Y	F	P	A	Q	Y	V	D	Q	T	D	L	E	K	Y	N	N	V	E	A	G	K	Y	T	V	G	L	G	Q	T	R	M	G	F	C	S	V	Q	E	D	I	N	S	L	C	L	T	V	V	Q	R	L	M	E	R	I	Q	L	P	W	D	S	V	G	R	L	E	V
Template Known Secondary structure				S	S												S												T	T			T	T																T	T																			T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																								.	.	.																																.	.
Query SS confidence																								.	.	.																																.	.
Query Sequence		A	T	T	S	A	T	H	A	F	P	S	A	A	C	Q	I	Q	S	M	L	G	I	.	.	.	K	G	C	P	A	F	D	V	A	A	A	C	A	G	F	T	Y	A	L	S	V	A	D	Q	Y	V	K	S	G	A	V	.	.	K	Y	A	L	V	V	G	S	D	V	L	A	R	T	C	D	P	T	D	R	G	T
Query Conservation																								.	.	.																																.	.
Alig confidence																								.	.	.																																.	.										.	.	.	.
Template Conservation																																																																					.	.	.	.
Template Sequence		G	T	E	T	I	I	D	K	S	K	A	V	K	T	V	L	M	E	L	F	Q	D	S	G	N	T	D	I	E	G	I	D	T	T	N	A	C	Y	G	G	T	A	S	L	F	N	A	A	N	W	M	E	S	S	S	W	D	G	R	Y	A	M	V	V	C	G	D	.	.	.	.	I	A	V	Y	P	S	G	N	A
Template Known Secondary structure				S			S		S	S	S							G	G	G	T	G	G	G	T					B						S	G	G	G														T	S	T	T			S										.	.	.	.						S	S	T	T
Template Predicted Secondary structure																																																																					.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.						.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence		I	I	I	F	G	D	G	A	G	A	A	V	L	A	A	S	E	E	P	G	I	I	S	T	H	L	H	A	D	G	S	Y	G	E	L	L	T	L	P	N	A	D	R	V	N	P	E	N	S	I	H	L	T	M	A	.	.	.	.	.	G	N	E	V	F	K	V	A	V	T	E	L	A	H	I	V	D	E	T	L
Query Conservation																																																									.	.	.	.	.
Alig confidence																																																									.	.	.	.	.
Template Conservation
Template Sequence		R	P	T	G	G	A	G	A	V	A	M	L	I	G	P	K	A	P	L	A	L	E	R	G	L	R	G	T	H	M	E	N	V	Y	D	F	Y	K	P	N	L	A	S	E	Y	P	I	V	D	G	K	L	S	I	Q	C	Y	L	R	A	L	D	R	C	Y	T	S	Y	R	K	K	I	Q	N	Q	W	K	Q	A	G
Template Known Secondary structure		G	G	G												S	S		S					T	T											S						T	T		S																																			T	T
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.																																															.	260	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	N	N	L	D	R	S	Q	L	D	W	L	V	P	H	Q	A	N	L	R	I	I	S	A	T	A	K	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	S	M
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	D	R	P	F	T	L	D	D	L	Q	Y	M	I	F	H	T	P	F	C	K	M	V	Q	K	S	L	A	R	L	M	F	N	D	F	L	S	A	S	S	D	T	Q	T	S	L	Y	K	G	L	E	A	F	G	G	L	K	L	E	D	T	Y	T	N	K	D	L	D	K	A	L	L	K	A	S	Q	D	M	F	D
Template Known Secondary structure								G	G	G		S							S	S																			S										G	G	G	G	G	G	T	T			G	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		263	.	.				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.			.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure					.	.	.																														.	.
Query SS confidence					.	.	.																														.	.
Query Sequence		D	N	V	.	.	.	V	V	T	L	D	R	H	G	N	T	S	A	A	S	V	P	C	A	L	D	E	A	V	R	D	G	R	I	K	.	.	P	G	Q	L	V	L	L	E	A	F	G	G	G	F	T	W	G	S	A	L	V	R
Query Conservation					.	.	.																														.	.
Alig confidence					.	.	.																														.	.
Template Conservation
Template Sequence		K	K	T	K	A	S	L	Y	L	S	T	H	N	G	N	M	Y	T	S	S	L	Y	G	C	L	A	S	L	L	S	H	H	S	A	Q	E	L	A	G	S	R	I	G	A	F	S	Y	G	S	G	L	A	A	S	F	F	S	F	R
Template Known Secondary structure				T	G	G	G	G										G	G	G													S						T	T										T	T	T
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions