Job Description P0A6R0 Confidence 100.00% Date Thu Jan 5 11:03:43 GMT 2012 Rank 29 Aligned Residues 312 % Identity 17% Template c2p8uB_ PDB info PDB header:transferase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa synthase, cytoplasmic; PDBTitle: crystal structure of human 3-hydroxy-3-methylglutaryl coa synthase i Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Y	T	K	I	I	G	T	G	S	Y	L	P	E	Q	V	R	T	N	A	D	L	E	K	M	V	D	T	S	D	E	W	I	V	T	R	T	G	I	R	E	R	H	I	A	A	P	N	E	T	V	S	T	M	G	F	E	A	A	T	R	A	I	E	M	A	G	I	E	K	D	Q	I	G	L	I	V	V	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	D	V	G	I	V	A	L	E	I	Y	F	P	S	Q	Y	V	D	Q	A	E	L	E	K	Y	D	G	V	D	A	G	K	Y	T	I	G	L	G	Q	A	K	M	G	F	C	T	D	R	E	D	I	N	S	L	C	M	T	V	V	Q	N	L	M	E	R	N	N	L	S	Y	D	C	I	G	R	L	E	V	G	T
Template Known Secondary structure															S													T			T	T																T	T																		T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																							.										.																							.	.
Query SS confidence																							.										.																							.	.
Query Sequence		T	S	A	T	H	A	F	P	S	A	A	C	Q	I	Q	S	M	L	G	I	K	.	G	C	P	A	F	D	V	A	A	.	A	C	A	G	F	T	Y	A	L	S	V	A	D	Q	Y	V	K	S	G	A	V	K	.	.	Y	A	L	V	V	G	S	D	V	L	A	R	T	C	D	P	T	D	R	G	T	I	I	I
Query Conservation																							.										.																							.	.
Alig confidence																							.										.																							.	.												.	.	.	.
Template Conservation																																																																					.	.	.	.
Template Sequence		E	T	I	I	D	K	S	K	S	V	K	T	N	L	M	Q	L	F	E	E	S	G	N	T	D	I	E	G	I	D	T	T	N	A	Y	G	G	T	A	A	V	F	N	A	V	N	W	I	E	S	S	S	W	D	G	R	Y	A	L	V	V	A	G	D	I	A	V	.	.	.	.	Y	A	T	G	N	A	R	P	T
Template Known Secondary structure		S			S		S	S	S							G	G	G	T	G	G	G	T					B																							S	T	T			S													.	.	.	.			S	S	T	T	G	G	G
Template Predicted Secondary structure																																																																					.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.					.	.	.	.	.	.	.	.	170
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.						.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																				.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.
Query Sequence		F	G	D	G	A	G	A	A	V	L	A	A	S	E	E	P	G	I	I	S	T	H	L	H	A	D	G	S	Y	G	E	L	L	T	L	P	N	A	D	R	V	N	P	E	N	S	I	H	L	T	.	.	.	.	.	M	A	G	N	E	V	F	K	V	A	V	T	E	L	A	H	I	V	D	E	T	L	A	A	N
Query Conservation																																																				.	.	.	.	.
Alig confidence																																																				.	.	.	.	.
Template Conservation
Template Sequence		G	G	V	G	A	V	A	L	L	I	G	P	N	A	P	L	I	F	E	R	G	L	R	G	T	H	M	Q	H	A	Y	D	F	Y	K	P	D	M	L	S	E	Y	P	I	V	D	G	K	L	S	I	Q	C	Y	L	S	A	L	D	R	C	Y	S	V	Y	C	K	K	I	H	A	Q	W	Q	K	E	G	N	D	K
Template Known Secondary structure													S	S		S					T	T											S						T	T		S	S																																		T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.																																															.	260	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	L	D	R	S	Q	L	D	W	L	V	P	H	Q	A	N	L	R	I	I	S	A	T	A	K	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	S	M	D	N	V
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	T	L	N	D	F	G	F	M	I	F	H	S	P	Y	C	K	L	V	Q	K	S	L	A	R	M	L	L	N	D	F	L	N	D	Q	N	R	D	K	N	S	I	Y	S	G	L	E	A	F	G	D	V	K	L	E	D	T	Y	F	D	R	D	V	E	K	A	F	M	K	A	S	S	E	L	F	S	Q	K	T
Template Known Secondary structure					G	G	G		S							S	S																				T	T	G	G	G		G	G	G	T	T		G	G	G	T	T			G	G	G		T	T												T								T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
					266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																												.	.
Query SS confidence		.	.	.																												.	.
Query Sequence		.	.	.	V	V	T	L	D	R	H	G	N	T	S	A	A	S	V	P	C	A	L	D	E	A	V	R	D	G	R	.	.	I	K	P	G	Q	L	V	L	L	E	A	F	G	G	G	F	T	W	G	S	A	L	V	R
Query Conservation		.	.	.																												.	.
Alig confidence		.	.	.																												.	.
Template Conservation
Template Sequence		K	A	S	L	L	V	S	N	Q	N	G	N	M	Y	T	S	S	V	Y	G	S	L	A	S	V	L	A	Q	Y	S	P	Q	Q	L	A	G	K	R	I	G	V	F	S	Y	G	S	G	L	A	A	T	L	Y	S	L	K
Template Known Secondary structure		T	G	G	G										G	G	G													S						T	T										T	T	T
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions