Phyre 2 alignment of P0A6R0 with c2gp6B

Job Description P0A6R0
Confidence 99.87% Date Thu Jan 5 11:03:43 GMT 2012

Rank 77 Aligned Residues 261

% Identity 18% Template c2gp6B_

PDB info PDB header:transferase Chain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 2; PDBTitle: x-ray crystal structure of mycobacterium tuberculosis beta-2 ketoacyl acyl carrier protein synthase ii (mtkasb)

Resolution 2.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.	.	.																											.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																											.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	T	V	S	T	M	G	F	E	A	A	T	R	A	I	E	M	A	G	I	E	K	D	Q	I	G	.	.	L	I	V	V	A	T	T	S	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	F	P	S	A	A	C	Q	I	Q	S	M	L	G	I
Query Conservation																											.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	G	Y	L	Q	R	M	S	T	V	L	S	R	R	L	W	E	N	A	G	S	P	E	V	D	T	N	R	L	M	V	S	I	G	T	G	L	G	S	A	E	E	L	V	F	S	Y	D	D	M	R	A	R	G	M	K	A	V	S	P	L	T	V	Q	K	Y	M	P	N	G	A	A	A	A	V	G	L	E	R	H	A
Template Known Secondary structure																		T	T						T	T	S							B	S	S		S	S								T	T	T	T	T	T		S	S	S	S		T	T						S	T	T										S
Template Predicted Secondary structure
Template SS confidence
	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.

	101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	G	C	P	A	F	D	V	A	A	A	C	A	G	F	T	Y	A	L	S	V	A	D	Q	Y	V	K	S	G	A	V	K	Y	A	L	V	V	G	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	A	R	T	C	D	P	T	D	R	G	T	I	I	I	F	G	D	G	A	G	A	A	V
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.
Template Sequence	K	A	.	G	V	M	T	P	V	S	A	C	A	S	G	A	E	A	I	A	R	A	W	Q	Q	I	V	L	G	E	A	D	A	A	I	C	G	G	V	E	T	R	I	E	A	V	P	I	A	G	F	A	Q	M	R	I	V	M	S	T	N	N	D	D	P	A	G	A	C	R	P	F	D	R	D	R	D	G	F	V
Template Known Secondary structure		S	.						B		G	G	G																T	S		S																					T	S	S	S						T	T	S	S	S	S	S			T	T	B	T	T
Template Predicted Secondary structure			.
Template SS confidence
	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

	166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	A	A	S	E	E	P	G	I	I	S	T	H	L	H	A	D	G	S	Y	G	E	L	L	T	L	P	N	A	D	R	V	N	P	E	N	S	I	H	L	T	M	A	G	N	E	V	F	K	V	A	V	T	E	L	A	H	I	V	D	E	T	L	A	A	N	N	L	D	R	S	Q	L	D	W	L	V	P	H	Q
Query Conservation
Alig confidence																																															.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.
Template Sequence	F	G	E	G	G	A	L	L	L	I	E	T	E	E	H	A	K	A	R	G	A	N	I	L	A	R	I	M	G	A	S	I	T	S	D	G	F	H	M	V	A	P	D	P	N	G	.	.	.	.	.	.	E	R	A	G	H	A	I	T	R	A	I	Q	L	A	G	L	A	P	G	D	I	D	H	V	N	A	H	A
Template Known Secondary structure	B	B																	T	T																	S		S	S	S			T	T		.	.	.	.	.	.														T	T			G	G	G
Template Predicted Secondary structure																																															.	.	.	.	.	.
Template SS confidence
	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.							.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

	246	.	.	.	250	.	.	.	.	.						.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290																												.	.	.
Predicted Secondary structure											.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	N	L	R	I	I	S	A	T	A	.	.	.	.	.	K	K	L	G	M	S	M	D	N	V	V	V	T	L	D	R	H	G	N	T	S	A	A	S	V	P	C	A	L	D	E	A	V	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	I
Query Conservation											.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	T	G	T	Q	V	G	D	L	A	E	G	R	A	I	N	N	A	L	G	G	N	R	P	A	V	Y	A	P	K	S	A	L	G	H	S	V	G	A	V	G	A	V	E	S	I	L	T	V	L	A	L	R	D	Q	V	I	P	P	T	L	N	L	V	N	L	D	P	E	I	D	L	D	V	V	A	G	E	P	R	P
Template Known Secondary structure		S																S		S								G	G	G	T	S		B		T	T	T																T						T	T		S	S	B		T	T								S	S
Template Predicted Secondary structure
Template SS confidence
	313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

	294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	P	G	Q	L	V	L	L	E	A	F	G	G	G	F	T	W	G	S	A	L	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	G	N	Y	R	Y	A	I	N	N	S	F	G	F	G	G	H	N	V	A	I	A	F	G
Template Known Secondary structure													T	T	T
Template Predicted Secondary structure
Template SS confidence
	393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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