Job Description P32132 Confidence 100.00% Date Thu Jan 5 11:49:17 GMT 2012 Rank 11 Aligned Residues 360 % Identity 25% Template c3tr5C_ PDB info PDB header:translation Chain: C: PDB Molecule:peptide chain release factor 3; PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii Resolution 2.11 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		I	E	K	L	R	N	I	A	I	I	A	H	V	D	H	G	K	T	T	L	V	D	K	L	L	Q	Q	S	G	T	F	D	S	R	A	E	T	Q	.	.	E	R	V	M	D	S	N	D	L	E	K	E	R	G	I	T	I	L	A	K	N	T	A	I	K	W	N	D	Y	R	I	N	I	V	D	T	P	G	H	A
Query Conservation																																								.	.
Alig confidence																																								.	.																		.	.	.	.
Template Conservation																																																											.	.	.	.
Template Sequence		T	A	X	R	R	T	F	A	I	I	S	H	P	D	A	G	K	T	T	L	T	E	K	L	L	L	F	G	G	A	I	Q	L	A	G	T	I	K	S	R	H	A	T	S	D	W	X	E	L	E	K	Q	V	T	T	S	V	.	.	.	.	X	Q	F	P	Y	K	D	Y	L	I	N	L	L	D	T	P	G	H	A
Template Known Secondary structure				T										T	T	S	S													T									T												T	T				S	S		.	.	.	.						T	T											S	T
Template Predicted Secondary structure																																																											.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	G	G	E	V	E	R	V	M	S	M	V	D	S	V	L	L	V	V	D	A	F	D	G	P	M	P	Q	T	R	F	V	T	K	K	A	F	A	Y	G	L	K	P	I	V	V	I	N	K	V	D	R	P	G	A	R	P	D	W	V	V	D	Q	V	F	D	L	F	V	N	L	D	A	T	D	E	Q	L	D
Query Conservation
Alig confidence																																																																					.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		D	F	T	E	D	T	Y	R	T	L	T	A	V	D	S	A	L	X	V	I	D	A	A	K	G	V	E	P	R	T	I	K	L	X	E	V	C	R	L	R	H	T	P	I	X	T	F	I	N	K	X	D	R	D	T	R	P	S	I	E	L	L	D	E	I	E	S	.	.	.	I	L	R	I	H	C	A	P	V	T
Template Known Secondary structure		T									G	G	G		S								T	T	T	B	S													T	T	T										T	T	S															.	.	.		S							S
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.
																																																																										160	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	I	V	Y	A	S	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	P	I	G	X	G	K	Y	F	K	G	I	Y	H	L	I	E	D	A	I	Y	L	Y	Q	P	S	E	R	I	E	G	I	N	N	P	E	L	D	K	K	L	G	D	L	A	S	E	L	R	N	E	I	E	L	V	K	G	A	S	H	P	F	E	R	E	G	Y	L	K	G	E	L	T	P	I	F	F	G	S	A
Template Known Secondary structure					S		T	T								T	T	T	T														T	T									T																	S											T	S								B	G
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.										200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.																	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.																	.	.	.
Query Sequence		L	N	G	I	A	G	L	D	H	E	D	M	A	E	D	M	T	P	L	Y	Q	A	I	V	D	H	V	P	A	P	D	V	.	.	.	.	.	.	.	.	.	D	L	D	G	P	F	Q	M	Q	I	S	Q	L	D	Y	N	.	.	.	S	Y	V	G	V	I	G	I	G	R	I	K	R	G	K	V	K	P	N	Q
Query Conservation																																		.	.	.	.	.	.	.	.	.																	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.
Template Sequence		I	N	N	F	.	.	.	.	.	.	.	.	.	.	G	V	G	E	L	L	D	A	F	V	K	E	A	P	P	P	Q	G	R	E	T	N	S	R	L	V	K	P	E	E	E	K	F	S	G	F	V	F	K	I	Q	A	N	X	D	P	G	H	R	D	R	I	A	F	L	R	I	A	S	G	Q	Y	Q	K	G	X
Template Known Secondary structure		G	G	T	B	.	.	.	.	.	.	.	.	.	.	S												S								B	S	S					T	T		S	S													S	T	T													S				T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.											260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	T	I	I	D	S	E	G	K	T	R	N	A	K	V	G	K	V	L	G	H	L	G	L	E	R	I	E	T	D	L	A	E	A	G	D	I	V	A	I	T	G	L	G	E	L	N	I	S	D	T	V	C	D	T	Q	N	V	E	A	L	P	A	L	S	V	D	E	P	T	V	S	M	F	F	C	V	N	T
Query Conservation
Alig confidence										.	.	.																																																	.
Template Conservation										.	.	.																																																	.
Template Sequence		K	A	Y	H	V	R	L	K	.	.	.	K	E	I	Q	I	N	N	A	L	T	F	X	A	G	K	R	E	N	A	E	E	A	W	P	G	D	I	I	G	L	H	N	H	G	T	I	Q	I	G	D	T	F	T	Q	G	E	R	F	.	K	F	T	G	I	P	N	F	A	S	E	L	F	R	L	V	R	L	K	D
Template Known Secondary structure						G	G	G	T	.	.	.						S	S		B			B	T	T		S	S			S				T	T								S	S				T	T					S	S				.		B																	S	S
Template Predicted Secondary structure										.	.	.																																																	.
Template SS confidence
		326	.	.	.	330	.	.	.				.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.		.	.	390	.	.
Predicted Secondary structure																																																															.												.
Query SS confidence																																																															.												.
Query Sequence		S	P	F	C	G	K	E	G	K	F	V	T	S	R	Q	I	L	D	R	L	N	K	E	L	V	H	N	V	A	L	R	V	E	E	T	E	D	A	D	A	F	R	V	S	G	R	G	E	L	H	L	S	V	L	I	E	N	M	R	R	E	.	G	F	E	L	A	V	S	R	P	K	V	.	I	F	R	E	I
Query Conservation																																																															.												.
Alig confidence		.	.	.	.	.	.	.	.	.																						.																															.												.
Template Conservation		.	.	.	.	.	.	.	.	.																						.
Template Sequence		.	.	.	.	.	.	.	.	.	P	L	K	Q	K	A	L	L	K	G	L	T	Q	L	S	E	E	G	A	T	Q	.	L	F	R	P	L	D	S	N	E	L	I	L	G	A	V	G	L	L	Q	F	D	V	V	A	Y	R	L	E	N	E	Y	N	V	K	C	V	Y	E	S	V	N	V	V	T	A	R	W	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	G	G	G														T	T	S			.					T	T	S	S							S	S	T																								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																						.
Template SS confidence
											402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.		.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470