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Job DescriptionP32132
Confidence100.00%DateThu Jan 5 11:49:17 GMT 2012
Rank29Aligned Residues247
% Identity24%Templatec3mcaA_
PDB info PDB header:translation regulation/hydrolaseChain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay
Resolution2.74 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG
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Template Sequence  KPVVHLVVTGHVDSGKSTMLGRIMFELGEI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IGDAPGHRDFI
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   175....180.........190.........200.... .....210.....
 
   83......90.........100.........110.........120.. .......130.... .....140.........150........
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Query Sequence  GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLK. PIVVINKVDRPG. . . ARPDWVVDQVFDLFVNLDATDEQL
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Template Sequence  SGMIAAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFK. TS
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   270.........280.........290.........300.........310.........320.........330.........340...... ..
 
   159160.........170..... ....180.........190.........200.........210.........220.........230.....
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Query Sequence  DFPIVYASALNGIAGLD. . . HEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQ
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Template Sequence  NVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPR. SVTVTGRVEAGNVQVNQ
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   356...360.........370.........380.........390.........400.........410....... ..420.........430....
 
   236...240.........250.........260.........270....... ..280.........290......
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Query Sequence  QVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAIT. . . . GLGELNISDTVCDTQNVEA
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Template Sequence  VLYDVSSQ. . . . . . EDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENPVR
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   435....440.. .......450.........460.........470.........480.........490...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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