Job Description P32132 Confidence 100.00% Date Thu Jan 5 11:49:17 GMT 2012 Rank 26 Aligned Residues 252 % Identity 27% Template c3izyP_ PDB info PDB header:rna, ribosomal protein Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial; PDBTitle: mammalian mitochondrial translation initiation factor 2 Resolution 10.80 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		I	A	I	I	A	H	V	D	H	G	K	T	T	L	V	D	K	L	L	Q	Q	S	G	T	F	D	S	R	A	E	T	Q	E	R	V	M	D	S	N	D	L	E	K	E	R	G	I	T	I	L	A	K	N	T	A	I	K	W	.	N	D	Y	R	I	N	I	V	D	T	P	G	H	A	D	F	G	G	E	V	E
Query Conservation																																																												.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	I	M	G	H	V	D	H	G	K	T	T	L	L	D	K	L	R	K	T	Q	V	A	A	M	E	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	T	Q	H	I	G	A	F	L	V	S	L	P	S	G	E	K	I	T	F	L	D	T	P	G	H	A	A	F	S	A	M	R	A
Template Known Secondary structure							S	T	T	T	T																S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B				T	T	S			B		S	S		S	S			B					S	S	S			T	T	T	S	B	B
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.																	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	M	S	M	V	D	S	V	L	L	V	V	D	A	F	D	G	P	M	P	Q	T	R	F	V	T	K	K	A	F	A	Y	G	L	K	P	I	V	V	I	N	K	V	D	R	P	G	A	R	P	D	W	V	V	D	Q	V	F	D	L	F	V	N	L	D	A	T	D	E	Q	L	D	F	P	I	V	Y	A	S
Query Conservation
Alig confidence																																																														.	.
Template Conservation																																																														.	.
Template Sequence		R	G	T	Q	V	T	D	I	V	I	L	V	V	A	A	D	D	G	V	M	K	Q	T	V	E	S	I	Q	H	A	K	D	A	H	V	P	I	V	L	A	I	N	K	C	D	K	A	E	A	D	P	E	K	V	K	K	E	L	L	A	.	.	Y	D	V	V	C	E	D	Y	G	G	D	V	Q	A	V	H	V	S
Template Known Secondary structure		S	S	S	B	S	B	S	S						B	S	S	S															T	T	T								B	S	G	G	G	T	T	T	S			S	S	S	S					.	.	T	T	S					S	S	S	S
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	N	G	I	A	G	L	D	H	E	D	M	A	E	D	M	T	P	L	Y	Q	A	I	V	D	H	V	P	A	P	D	V	D	L	D	G	P	F	Q	M	Q	I	S	Q	L	D	Y	N	S	Y	V	G	V	I	G	I	G	R	I	K	R	G	K	V	K	P	N	Q	Q	V	T	I	I	D	S	E	G	K	T
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.																																																		.	.	.
Template Conservation																						.	.	.	.	.	.	.	.																																																		.	.	.
Template Sequence		A	L	T	G	E	N	M	M	A	L	A	E	A	T	I	A	L	A	E	M	.	.	.	.	.	.	.	.	L	E	L	K	A	D	P	T	G	A	V	E	G	T	V	I	E	S	F	T	D	K	G	R	G	P	V	T	T	A	I	I	Q	R	G	T	L	R	K	G	S	I	L	V	A	G	K	S	W	.	.	.
Template Known Secondary structure		S	S	S	S		S	S												T	T	.	.	.	.	.	.	.	.							S	S	S	S												T	T															S	S							S	S			.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.																																																		.	.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.									.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		R	N	A	K	V	G	K	V	L	G	H	L	G	L	E	R	I	E	T	D	L	A	E	A	G	D	I	V	A	I	T	G	L	G	E	L	.	N	I	S	D	T	V	C	D	T	Q	N
Query Conservation																																						.
Alig confidence		.	.												.	.	.																					.
Template Conservation		.	.												.	.	.
Template Sequence		.	.	A	K	V	R	L	M	F	D	E	N	G	.	.	.	R	A	V	N	E	A	Y	P	S	M	P	V	G	I	I	G	W	R	D	L	P	S	A	G	D	E	I	L	E	V	E	S
Template Known Secondary structure		.	.												.	.	.			S			S			S	T	T					S	S								S	S			S			S
Template Predicted Secondary structure		.	.												.	.	.
Template SS confidence
				394	.	.	.	.	.	400	.	.	.	.				.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions