Job Description P32132 Confidence 100.00% Date Thu Jan 5 11:49:17 GMT 2012 Rank 2 Aligned Residues 503 % Identity 29% Template c3degC_ PDB info PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp Resolution NULL Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.
Query Sequence		I	E	K	L	R	N	I	A	I	I	A	H	V	D	H	G	K	T	T	L	V	D	K	L	L	Q	Q	S	G	T	F	D	S	R	A	E	T	Q	E	R	V	M	D	S	N	D	L	E	K	E	R	G	I	T	I	L	A	K	N	T	A	I	K	W	N	.	.	.	.	.	D	Y	R	I	N	I	V	D	T	P
Query Conservation																																																																			.	.	.	.	.
Alig confidence																																						.																													.	.	.	.	.
Template Conservation																																						.
Template Sequence		M	K	N	I	R	N	F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	.	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L	N	F	I	D	T	P
Template Known Secondary structure			T	T										S	S	S	S	S	S										S	S			S	S				.	S	S	S			S	S	S							T	S		S	S											T	T	S
Template Predicted Secondary structure																																						.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	A	D	F	G	G	E	V	E	R	V	M	S	M	V	D	S	V	L	L	V	V	D	A	F	D	G	P	M	P	Q	T	R	F	V	T	K	K	A	F	A	Y	G	L	K	P	I	V	V	I	N	K	V	D	R	P	G	A	R	P	D	W	V	V	D	Q	V	F	D	L	F	V	N	L	D	A	T	D	E
Query Conservation
Alig confidence																																																																										.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.
Template Sequence		G	H	V	D	F	S	Y	E	V	S	R	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	D	L	E	V	V	P	V	L	N	K	I	D	L	P	A	A	D	P	E	R	V	A	E	E	I	E	D	I	V	.	.	.	.	.	.	.	G
Template Known Secondary structure				S	T	T									T	T		S								T	T	T				T												T	T										T	T	S	T	T														T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.								.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	D	F	P	I	V	Y	A	S	A	L	N	G	I	A	G	L	D	H	E	D	M	A	E	D	M	T	P	L	Y	Q	A	I	V	D	H	V	P	A	P	D	V	D	L	D	G	P	F	Q	M	Q	I	S	Q	L	D	Y	N	S	Y	V	G	V	I	G	I	G	R	I	K	R	G	K	V	K	P	N	Q	Q
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	A	T	D	A	V	R	C	S	A	K	T	G	V	.	.	.	.	.	.	.	.	.	.	G	V	Q	D	V	L	E	R	L	V	R	D	I	P	P	P	E	G	D	P	E	G	P	L	Q	A	L	I	I	D	S	W	F	D	N	Y	L	G	V	V	S	L	I	R	I	K	N	G	T	L	R	K	G	D	K
Template Known Secondary structure					T	T						T	T	T		T	.	.	.	.	.	.	.	.	.	.	T												S							T	T	S		B											T	T	T											S				S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.											.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																									.																					.	.
Query SS confidence																																									.																					.	.
Query Sequence		V	T	I	I	D	S	E	G	K	T	R	N	A	K	V	G	K	V	L	G	H	L	G	L	E	R	I	E	T	D	L	A	E	A	G	D	I	V	A	.	I	T	G	L	G	E	L	N	I	S	D	T	V	C	D	T	Q	N	V	E	.	.	A	L	P	A	L	S	V	D	E	P	T	V	S	M	F	F	C	V
Query Conservation																																									.																					.	.
Alig confidence														.																											.																					.	.
Template Conservation														.
Template Sequence		V	K	V	M	S	T	G	Q	T	Y	N	A	.	D	R	L	G	I	F	T	P	K	Q	V	D	R	T	E	L	K	C	G	E	V	G	W	L	V	C	A	I	K	D	I	H	G	A	P	V	G	D	T	L	T	L	A	R	N	P	A	E	K	A	L	P	G	F	K	K	V	K	P	Q	V	Y	A	G	L	F	P
Template Known Secondary structure					T	T	T							.							S	S	S					S				T	T										S	S	T	T	S	S		T	T						S	S	S	B		S	S			T	T							S
Template Predicted Secondary structure														.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.																							.
Query SS confidence																																											.	.	.																							.
Query Sequence		N	T	S	P	F	C	G	K	E	G	K	F	V	T	S	R	Q	I	L	D	R	L	N	K	E	L	V	H	N	V	A	L	R	V	E	E	T	E	D	A	D	.	.	.	A	F	R	V	S	G	R	G	E	L	H	L	S	V	L	I	E	N	M	R	R	E	.	G	F	E	L	A	V	S	R	P	K	V	I	F
Query Conservation																																											.	.	.																							.
Alig confidence				.	.	.	.	.	.	.	.	.																															.	.	.																							.
Template Conservation				.	.	.	.	.	.	.	.	.
Template Sequence		V	S	.	.	.	.	.	.	.	.	.	S	D	D	Y	E	A	F	R	D	A	L	G	K	L	S	L	N	D	A	S	L	F	Y	E	P	E	S	S	S	A	L	G	F	G	F	R	C	G	F	L	G	L	L	H	M	E	I	I	Q	E	R	L	E	R	E	Y	D	L	D	L	I	T	T	A	P	T	V	V	Y
Template Known Secondary structure		S	S	.	.	.	.	.	.	.	.	.	G	G	G													T	T		S	S									T	T	T									S	S														T	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.
Template SS confidence
		302	.										.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		390	.	.																					.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.
Query Sequence		R	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	R	K	Q	E	P	Y	E	N	V	T	L	D	V	E	E	Q	H	Q	G	S	V	M	Q	A	L	G	E	R	K	G	D	L	K	N	M	N	P	D	G	K	G	R	V	R	L	D	Y	V	I	P	S	R	G	.	L
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.													.
Template Conservation																																																																			.
Template Sequence		E	V	E	T	T	S	R	E	V	I	Y	V	D	S	P	S	K	L	P	A	V	N	N	I	Y	E	L	R	E	P	I	A	E	C	H	M	L	L	P	Q	A	Y	L	G	N	V	I	T	L	C	V	E	K	R	G	V	Q	T	N	M	V	Y	H	G	N	.	Q	V	A	L	T	Y	E	I	P	M	A	E	V	V
Template Known Secondary structure						S	S	S						S	S	G	G	G				G	G	G																	G	G	G											T	T										T	T	.
Template Predicted Secondary structure																																																																			.
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.		.	.	440	.	.	.	.	.	.	.	.	.	450	.
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	F	R	S	E	F	M	T	M	T	S	G	T	G	L	L	Y	S	T	F	S	H	Y	D	D	V	R	P	G	E	V	G	Q	R	Q	N	G	V	L	I	S	N	G	Q	G	K	A	V	A	F	A	L	F	G	L	Q	D	R	G	K	L	F	L	G	H	G	A	E	V	Y	E	G	Q	I	I	G	I	H	S
Query Conservation
Alig confidence																																									.	.	.																							.	.	.	.	.	.	.
Template Conservation																																									.	.	.																							.	.	.	.	.	.	.
Template Sequence		L	D	F	F	D	R	L	K	S	T	S	R	G	Y	A	S	L	D	Y	N	F	K	R	F	Q	A	S	D	M	V	R	V	D	V	L	I	N	G	E	.	.	.	R	V	D	A	L	A	L	I	T	H	R	D	N	S	Q	N	R	G	R	E	L	V	.	.	.	.	.	.	.	E	K	M	K	D	L	I	P	R
Template Known Secondary structure		T	T	T								T	T	T																								S	S	S	.	.	.	B		G	G	G						G	G	G										.	.	.	.	.	.	.							S		S
Template Predicted Secondary structure																																									.	.	.																							.	.	.	.	.	.	.
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490				.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.								.	.	.	.	.	.	.	520	.
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	N	D	L	T	V	N	C	L	T	G	K	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	F	D	I	A	I	Q	A	A	I	G	T	H	I
Template Known Secondary structure			S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.