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Job DescriptionP32132
Confidence100.00%DateThu Jan 5 11:49:17 GMT 2012
Rank3Aligned Residues465
% Identity30%Templatec3b8hA_
PDB info PDB header:biosynthetic protein/transferaseChain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30......... 40.........50.........60.........70.........80.
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Query Sequence  EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQ. ERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF
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Template Sequence  TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAGITIKSTAISLYSEMSDEDVKEIKQK. . . TDGNSFLINLIDSPGHVDF
Template Known Secondary structure  GG

GGGTB




B





SS
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SS


SSTT
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   17..20.........30.........40.........50.........60.........70.... .....80.........90...
 
   82.......90.........100.........110.........120.........130.........140.........150.
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Query Sequence  GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL. . . . . . . . . .
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Template Sequence  SSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVST
Template Known Secondary structure  T
STTTBS
TT

TS


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   112.......120.........130.........140.........150.........160.........170.........180.........190.
 
   152.......160.........170.........180.
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Query Sequence  . . . . . . . DATDEQLDFPIVYASALNGIAGLDHEDMAE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  YADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLER
Template Known Secondary structure  S
GGG





GGGT
TTTTTTTTT

SSSS
TTTTS
SB
TTS
B

B
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   192.......200.........210.........220.........230.........240.........250.........260.........270.
 
   182.......190.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DMTPLYQAIVDHVPAP. . . . . .
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Template Sequence  AFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAY
Template Known Secondary structure  TTT
TTTT



GGGGG

SBS

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   272.......280.........290.........300.........310.........320.........330.........340.........350.
 
   198.200.........210.........220 .........230.........240... ......250.
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Query Sequence  . . . . . . . . . . . . . . . . . . . DVDLDGPFQMQISQLDYNSYVGV. IGIGRIKRGKVKPNQQVTIIDSE. . . . . . GKTRNAKV
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Template Sequence  RAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAI
Template Known Secondary structure  BSS
TTSTT
SSSS
BSSTT
STT

TT

SSS
TT
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   352.......360.........370.........380.........390.........400.........410.........420.........430.
 
   252.......260.........270.........280.... .....290.........300... ......310.........320.........
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Query Sequence  GKVLGHLGLERIETDLAEAGDIVAITGLGELNI. SDTVCDTQNVEALPALSVD. EPTVSMFFCVNTSPFCGKEGKFVTSR
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Template Sequence  QRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKN. . . . . . . . . ANDLP
Template Known Secondary structure  STTSTT
S
TTT
SS
S
TT


BS








SS.........TTS
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   432.......440.........450.........460.........470.........480.........490....... ..500..
 
   330.........340.........350.........360.........370...... ...380.........390..
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Query Sequence  QILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE. . GFELAVSRPKVIFREI. . . . . . . . . . . . . . .
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Template Sequence  KLVEGLKRLSKSDPCVLTYMS. ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPN
Template Known Secondary structure 
TT

.TT

SSTTS
S





SS

SS

TT
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   503......510.........520... ......530.........540.........550.........560.........570.........580.
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKD
Template Known Secondary structure  S



TTSS
TTS



TT
STTTSS

SS
TTGGGG
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   582.......590.........600.........610.........620.........630.........640.........650.........660.
 
   393......400.........410....
Predicted Secondary structure  ..........................................................




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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DGRKQEPYENVTLDVEEQHQGS
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Template Sequence  SVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGG
Template Known Secondary structure  S
TTTS

S

SS



S
GGG
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   662.......670.........680.........690.........700.........710.........720.........730.........740.
 
   415....420.........430.... .....440.........450.........460.........470.........480
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Query Sequence  VMQALGERKGDLKNMNPDGK. GRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV
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Template Sequence  IYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPL
Template Known Secondary structure  TTTT

SSSSGGG
TTTTT

B


SS
TT
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   743......750.........760.........770.........780.........790.........800.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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