Job Description P32132 Confidence 100.00% Date Thu Jan 5 11:49:17 GMT 2012 Rank 5 Aligned Residues 454 % Identity 30% Template c2ywfA_ PDB info PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus Resolution 2.24 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.						.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.
Query Sequence		E	K	L	R	N	I	A	I	I	A	H	V	D	H	G	K	T	T	L	V	D	K	L	L	Q	Q	S	G	T	F	D	S	R	A	E	T	Q	E	R	V	M	D	S	N	D	L	E	K	E	R	G	I	T	I	L	A	K	N	T	A	I	K	W	.	.	.	.	.	N	D	Y	R	I	N	I	V	D	T	P	G
Query Conservation																																																																	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	V	R	N	F	C	I	I	A	H	V	D	H	G	K	S	T	L	A	D	R	L	L	E	Y	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	G	I	T	V	K	M	Q	A	V	R	M	F	Y	K	A	K	D	G	N	T	Y	K	L	H	L	I	D	T	P	G
Template Known Secondary structure		G	G										T	T	S	S													T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S		S								T	T	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.																					.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	D	F	G	G	E	V	E	R	V	M	S	M	V	D	S	V	L	L	V	V	D	A	F	D	G	P	M	P	Q	T	R	F	V	T	K	K	A	F	A	Y	G	L	K	P	I	V	V	I	N	K	V	D	R	P	G	A	R	P	D	W	V	V	D	Q	V	F	D	L	F	V	N	L	D	A	T	D	E	Q
Query Conservation
Alig confidence																																																																									.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.
Template Sequence		H	V	D	F	S	Y	E	V	S	R	A	L	A	A	C	E	G	A	L	L	L	I	D	A	S	Q	G	I	E	A	Q	T	V	A	N	F	W	K	A	V	E	Q	D	L	V	I	I	P	V	I	N	K	I	D	L	P	S	A	D	V	D	R	V	K	K	Q	I	E	E	V	L	.	.	.	.	.	.	.	G	L
Template Known Secondary structure		S	G	G	G										T		S								T	T	T		S														T	T										T	T	S	T	T														T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	F	P	I	V	Y	A	S	A	L	N	G	I	A	G	L	D	H	E	D	M	A	E	D	M	T	P	L	Y	Q	A	I	V	D	H	V	P	A	P	D	V	D	L	D	G	P	F	Q	M	Q	I	S	Q	L	D	Y	N	S	Y	V	G	V	I	G	I	G	R	I	K	R	G	K	V	K	P	N	Q	Q	V
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.
Template Sequence		D	P	E	E	A	I	L	A	S	A	K	E	G	I	.	.	.	.	.	.	.	.	.	.	G	I	E	E	I	L	E	A	I	V	N	R	I	P	P	P	K	G	D	P	Q	K	P	L	K	A	L	I	F	D	S	Y	Y	D	P	Y	R	G	A	V	A	F	V	R	I	F	D	G	E	V	K	P	G	D	K	I
Template Known Secondary structure			G	G	G					B	T	T	T	T	B	.	.	.	.	.	.	.	.	.	.	S												S							T	T	S													T	T	T											S				T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.											170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																										.	.	.	.																				.	.
Query SS confidence																																										.	.	.	.																				.	.
Query Sequence		T	I	I	D	S	E	G	K	T	R	N	A	K	V	G	K	V	L	G	H	L	G	L	E	R	I	E	T	D	L	A	E	A	G	D	I	V	A	I	T	.	.	.	.	G	L	G	E	L	N	I	S	D	T	V	C	D	T	Q	N	V	E	A	.	.	L	P	A	L	S	V	D	E	P	T	V	S	M	F	F
Query Conservation																																										.	.	.	.																				.	.
Alig confidence								.	.	.											.																					.	.	.	.																				.	.
Template Conservation								.	.	.											.
Template Sequence		M	L	M	S	T	G	.	.	.	K	E	Y	E	V	T	E	V	G	A	.	Q	T	P	K	M	T	K	F	D	K	L	S	A	G	D	V	G	Y	I	A	A	S	I	K	D	V	R	D	I	R	I	G	D	T	I	T	H	A	K	N	P	T	K	E	P	V	P	G	F	Q	P	A	K	P	M	V	Y	A	G	I
Template Known Secondary structure				T	T	T	T	.	.	.											.		S	S	S					S				T	T							S					G	G	G	S		T	T						S	S	S			S	S			S
Template Predicted Secondary structure								.	.	.											.
Template SS confidence
		226	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.																							.
Query SS confidence																																													.	.	.																							.
Query Sequence		C	V	N	T	S	P	F	C	G	K	E	G	K	F	V	T	S	R	Q	I	L	D	R	L	N	K	E	L	V	H	N	V	A	L	R	V	E	E	T	E	D	A	D	.	.	.	A	F	R	V	S	G	R	G	E	L	H	L	S	V	L	I	E	N	M	R	R	E	.	G	F	E	L	A	V	S	R	P	K	V
Query Conservation																																													.	.	.																							.
Alig confidence						.	.	.	.	.	.	.	.	.																															.	.	.																							.
Template Conservation						.	.	.	.	.	.	.	.	.
Template Sequence		Y	P	A	E	.	.	.	.	.	.	.	.	.	D	T	T	Y	E	E	L	R	D	A	L	E	K	Y	A	I	N	D	A	A	I	V	Y	E	P	E	S	S	P	A	L	G	M	G	F	R	V	G	F	L	G	L	L	H	M	E	I	V	Q	E	R	L	E	R	E	Y	G	V	K	I	I	T	T	A	P	N	V
Template Known Secondary structure					T	.	.	.	.	.	.	.	.	.	T															T	T		S	S									T	T	T									S	S															S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.
Template SS confidence
		302	.	.	.										.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		388	.	390	.	.																							.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	F	R	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	R	K	Q	E	P	Y	E	N	V	T	L	D	V	E	E	Q	H	Q	G	S	V	M	Q	A	L	G	E	R	K	G	D	L	K	N	M	N	P	D	G	K	G	R	V	R	L	D	Y	V	I	P	S
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	Y	R	V	K	K	K	F	T	D	E	V	I	E	V	R	N	P	M	D	F	P	D	N	A	G	L	I	E	Y	V	E	E	P	F	V	L	V	T	I	I	T	P	K	E	Y	V	G	P	I	I	Q	L	C	Q	E	K	R	G	I	Q	K	N	M	T	Y	L	D	P	N	T	V	Y	L	E	Y	E	M	P	L
Template Known Secondary structure								T	T		S	S					S	S	G	G	G	S		S		G	G	G																	G	G	G											T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		446	.	.	.		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		R	G	L	I	.	G	F	R	S	E	F	M	T	M	T	S	G	T	G	L	L	Y	S	T	F	S	H	Y	D	D	V	R	P	G	E	V	G	Q	R	Q	N	G	V	L	I	S	N	G	Q	G	K	A	V	A	F	A	L	F	G	L	Q	D	R	G	K
Query Conservation						.
Alig confidence						.																																							.	.	.
Template Conservation																																													.	.	.
Template Sequence		S	E	I	I	V	D	F	H	D	K	I	K	S	I	S	R	G	F	A	S	Y	D	Y	E	F	I	G	Y	R	P	S	D	L	I	K	L	T	V	L	I	N	K	K	.	.	.	P	V	D	A	L	S	F	I	V	H	A	D	R	A	Q	K	F	A	R
Template Known Secondary structure																T	T	T																								T	T		.	.	.			G	G	G						T	T	T
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.				.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.