Job Description P32132 Confidence 97.63% Date Thu Jan 5 11:49:17 GMT 2012 Rank 289 Aligned Residues 163 % Identity 23% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.																			.	.	.
Predicted Secondary structure																																									.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	I	I	A	H	V	D	H	G	K	T	T	L	V	D	K	L	L	Q	Q	S	G	T	F	D	S	R	A	E	T	Q	E	R	V	M	D	S	N	.	.	.	D	L	E	K	E	R	G	I	T	I	L	A	K	N	T	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	W	N
Query Conservation																																									.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.															.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.
Template Sequence		I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	.	.	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K
Template Known Secondary structure								S	S	S	S	T	T												.	.												S				T	T	G	G	G	S	S							S	S							S	S	S			S	S	S	T	T							T	T	S
Template Predicted Secondary structure																									.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		67	.	.	70	.	.	.	.	.	.	.			.	.	80	.			.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.					.	.												.	.																														.	.
Query SS confidence													.	.					.	.												.	.																														.	.
Query Sequence		D	Y	R	I	N	I	V	D	T	P	G	.	.	H	A	D	F	.	.	G	G	E	V	E	R	V	M	S	M	V	.	.	D	S	V	L	L	V	V	D	A	F	D	G	P	M	P	Q	T	R	F	V	T	K	K	A	F	A	Y	G	L	.	.	K	P	I	V	V	I	N	K	V	D	R	P	G	A	R	P	D
Query Conservation													.	.					.	.												.	.																														.	.
Alig confidence													.	.					.	.												.	.													.	.	.															.	.												.
Template Conservation																																														.	.	.																												.
Template Sequence		K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	.	.	.	Q	Q	A	G	I	Q	A	K	A	F	K	E	A	V	G	E	I	G	S	I	I	V	T	K	L	D	G	.	S	A	K	G	G
Template Known Secondary structure		S		S									S		S	S											T	T	S	S	S			S								G	G	G	G	.	.	.	G	G										T	T	S		S									S	S	S	.		S	T	T
Template Predicted Secondary structure																																														.	.	.																												.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.				.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	V	D	Q	V	F	D	L	F	V	N	L	D	A	T	D	E	Q	L	D	F	P	I	V	Y	A	S	A	L	N	G	I	A	G	L	D	H	E	D	M	A	E	D	M	T	P	L	Y
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	L	S	A	V	A	.	.	.	.	.	.	.	.	.	.	.	E	T	K	A	P	I	K	F	I	G	I	G	E	G	I	D	D	L	E	P	F	D	P	K	K	F	I	S	R	L	L
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.		S	S									S	S	S	S	S	S			B											T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.												.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions