Job Description P32132 Confidence 99.02% Date Thu Jan 5 11:49:17 GMT 2012 Rank 122 Aligned Residues 148 % Identity 16% Template c2q3fB_ PDB info PDB header:protein binding Chain: B: PDB Molecule:ras-related gtp-binding protein d; PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		R	N	I	A	I	I	A	H	V	D	H	G	K	T	T	L	V	D	K	L	L	Q	Q	S	G	T	F	D	S	R	A	E	T	Q	E	R	V	M	D	S	N	D	L	E	K	E	R	G	I	T	I	L	A	K	N	T	A	I	K	W	N	.	D	Y	R	I	N	I	V	D	T	P	G	H	A	D	F	G	G	E
Query Conservation																																																															.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	R	I	L	L	X	G	L	R	R	S	G	K	S	S	I	Q	K	V	V	F	H	K	X	S	P	N	E	T	L	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	T	N	K	I	C	R	E	D	V	S	N	S	S	F	V	N	F	Q	I	W	D	F	P	G	Q	I	D	F	F	D	P
Template Known Secondary structure									S	T	T	S	S										S				G	G	G	G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S									S	S											S				T	T		T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.																.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		85				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.						120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.						.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure			.	.	.																																			.	.	.	.	.																		.	.	.	.	.
Query SS confidence			.	.	.																																			.	.	.	.	.																		.	.	.	.	.
Query Sequence		V	.	.	.	E	R	V	M	S	M	V	D	S	V	L	L	V	V	D	A	F	D	G	P	M	P	Q	T	R	F	V	T	K	K	A	F	A	Y	.	.	.	.	.	G	L	K	P	I	V	V	I	N	K	V	D	R	P	G	A	R	.	.	.	.	.	P	D	W	V	V	D	Q	V	F	D	L	F	V	N	L
Query Conservation			.	.	.																																			.	.	.	.	.																		.	.	.	.	.
Alig confidence			.	.	.																																			.	.	.	.	.																		.	.	.	.	.
Template Conservation
Template Sequence		T	F	D	Y	E	X	I	F	R	G	T	G	A	L	I	F	V	I	D	S	Q	D	D	Y	X	E	A	L	A	R	L	H	L	T	V	T	R	A	Y	K	V	N	T	D	I	N	F	E	V	F	I	H	K	V	D	G	L	S	D	D	H	K	I	E	T	Q	R	D	I	H	Q	R	A	N	D	D	L	A	D	A
Template Known Secondary structure		T									T										T	T	S																					T	T										T	T	S	S																							T
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	T	D	E	Q	L	D	F	P	I	V	Y	A	S	A	L	N	G
Query Conservation
Alig confidence					.	.
Template Conservation					.	.
Template Sequence		G	L	E	.	.	K	I	H	L	S	F	Y	L	T	S	I	Y	D	H
Template Known Secondary structure		T		T	.	.	T	S									T	T	S	S
Template Predicted Secondary structure					.	.
Template SS confidence
		189	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions