Job Description P32132 Confidence 100.00% Date Thu Jan 5 11:49:17 GMT 2012 Rank 30 Aligned Residues 355 % Identity 22% Template c2plfA_ PDB info PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form. Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.												.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Query Sequence		I	E	K	L	R	N	I	A	I	I	A	H	V	D	H	G	K	T	T	L	V	D	K	L	L	Q	Q	S	G	T	F	D	S	R	A	E	.	.	.	.	.	.	.	.	.	.	.	T	Q	E	R	V	M	D	S	N	D	L	E	K	E	R	G	I	T	I	L	A	K	N	T	A	I	K	W	N	D	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation
Template Sequence		V	Q	P	E	V	N	I	G	V	V	G	H	V	D	H	G	K	T	T	L	V	Q	A	I	T	G	I	W	T	S	K	H	S	E	E	L	K	R	G	M	T	I	K	L	G	Y	A	E	T	N	I	G	V	C	E	S	C	K	K	P	E	A	Y	V	T	E	P	S	C	K	S	C	G	S	D	D	E	P	K	F
Template Known Secondary structure													S	S	T	T	S	S	S	T	T						S	S		S	T	T		T	T	T	T	T	T				S	S												T	T	S		T	T	T	T			S	S	S			G	G	G	T			S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
			68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure		.																																							.																	.
Query SS confidence		.																																							.																	.
Query Sequence		.	Y	R	I	N	I	V	D	T	P	G	H	A	D	F	G	G	E	V	E	R	V	M	S	M	V	D	S	V	L	L	V	V	D	A	F	D	G	P	.	M	P	Q	T	R	F	V	T	K	K	A	F	A	Y	G	L	.	K	P	I	V	V	I	N	K	V	D	R	P	G	A	R	P	D	W	V	V	D	Q	V
Query Conservation		.																																							.																	.
Alig confidence		.																																							.																	.														.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		L	R	R	I	S	F	I	D	A	P	G	H	E	V	L	M	A	T	M	L	S	G	A	A	L	M	D	G	A	I	L	V	V	A	A	N	E	P	F	P	Q	P	Q	T	R	E	H	F	V	A	L	G	I	I	G	V	K	N	L	I	I	V	Q	N	K	V	D	V	V	S	.	.	.	K	E	E	A	L	S	Q
Template Known Secondary structure												S	S				S	S	S					T	T	S		S								T	T	S		S	S														T	T			S								G	G	G	S		.	.	.
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.									.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.
Query Sequence		F	D	L	F	V	N	L	D	A	T	D	E	Q	L	D	F	P	I	V	Y	A	S	A	L	N	G	I	A	G	L	D	H	E	D	M	A	E	D	M	T	P	L	Y	Q	A	I	V	D	H	V	P	A	P	D	V	D	L	D	G	P	F	Q	M	Q	I	S	Q	L	D	.	.	.	.	.	.	.	.	Y	N	S
Query Conservation																																																																							.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	R	Q	I	K	Q	F	T	K	G	T	W	A	E	N	V	P	I	I	P	V	S	A	L	H	K	I	.	.	.	.	.	.	.	.	.	.	N	I	D	S	L	I	E	G	I	E	E	Y	I	K	T	P	Y	R	D	L	S	Q	K	P	V	M	L	V	I	R	S	F	D	V	N	K	P	G	T	Q	F	N	E
Template Known Secondary structure							T	T	S	T	T	S	G	G	G	G							B	T	T	T	T	B	.	.	.	.	.	.	.	.	.	.	S												S							T	T	S															T	T			G	G	G
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.											190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.						.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.								.	.	280	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		Y	V	G	V	I	G	I	G	R	I	K	R	G	K	V	K	P	N	Q	Q	V	T	I	I	D	S	E	G	K	T	R	N	A	K	V	G	K	V	L	G	H	L	.	.	.	.	.	G	L	E	R	I	E	T	D	L	A	E	A	G	D	I	V	A	I	T	.	.	.	.	.	.	.	G	L	G	E	L	N	I
Query Conservation																																												.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	G	G	V	I	G	G	S	I	I	Q	G	L	F	K	V	D	Q	E	I	K	V	L	P	G	L	R	V	E	K	Q	G	K	V	S	Y	E	P	I	F	T	K	I	S	S	I	R	F	G	D	E	E	F	K	E	A	K	P	G	G	L	V	A	I	G	T	Y	L	D	P	S	L	T	K	A	D	N	L	L
Template Known Secondary structure														S				T	T													G	G	G	S																T	T				S				T	T	S							S	S		G	G	G	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	T	V	C	D	T	Q	N	V	E	A	L	P	A	L	S	V	D	E	P	T	V	S	M	F	F	C	V	N	T	S	P	F	C	G	K	E	G	K	F	V	T	S	R	Q	I	L	D	R	L	N	K	E	L	V	H	N	V	A	L	R	V	E	E	T	E	D	A	D	A	F	R	V	S	G	R	G	E	L
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		G	S	I	I	T	L	A	D	A	E	.	.	.	.	.	.	.	.	V	P	V	L	W	N	I	R	I	K	Y	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	R	V	V	G	A	K	E	M	L	K	V	D	P	I	.	R	A	K	E	T	L	M	L	S	V	G	S	S
Template Known Secondary structure		T						T	T			.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S					T	T	T								.		T	T								T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.									.	.	.	.	.	.	.	330	.	.	.	.	.																				.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	S	V	L	I	E	N	M	R	R	E	G	F	E	L	A	V	S	R	P	K	V	I	F	R	E	I	D	G	R	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	T	L	G	I	V	T	S	V	K	K	D	E	I	E	V	E	L	R	R	P	V	A	V	W	S	N	N	I	R	T	V	I
Template Known Secondary structure												S	S														S	S	S
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.