Job Description P32132 Confidence 97.70% Date Thu Jan 5 11:49:17 GMT 2012 Rank 283 Aligned Residues 122 % Identity 24% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.										.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	N	I	A	I	I	A	H	V	D	H	G	K	T	T	L	V	D	K	L	L	Q	Q	S	G	T	F	D	S	R	A	E	T	Q	E	R	V	M	D	S	.	.	.	.	.	.	.	.	.	N	D	L	E	K	E	R	G	I	T	I	L	A	K	N	T	A	I	K	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																										.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.														.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.
Template Sequence		N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	.	.	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F
Template Known Secondary structure									S	T	T	S	S														.	.		T	T											S	S	S														T										S
Template Predicted Secondary structure																											.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
			65	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure		.														.	.	.	.																.	.
Query SS confidence		.														.	.	.	.																.	.
Query Sequence		.	W	N	D	Y	R	I	N	I	V	D	T	P	G	.	.	.	.	H	A	D	F	G	G	E	V	E	R	V	M	S	M	V	.	.	D	S	V	L	L	V	V	D	A	F	D	G	P	M	P	Q	T	R	F	V	T	K	K	A	F	A	Y	G	L	K	P	I	V	V	I	N	K	V	D
Query Conservation		.														.	.	.	.																.	.
Alig confidence		.														.	.	.	.																.	.													.																						.
Template Conservation																																																	.																						.
Template Sequence		K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	.	Q	A	C	E	A	Q	A	K	A	F	K	D	K	V	D	V	A	S	V	I	V	.	T	K	L	D
Template Known Secondary structure				T	T													T	T																		S								T	T			.	T	T																				.			T	T
Template Predicted Secondary structure																																																	.																						.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions