Job Description P32132 Confidence 98.10% Date Thu Jan 5 11:49:17 GMT 2012 Rank 248 Aligned Residues 145 % Identity 19% Template c2il1A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:rab12; PDBTitle: crystal structure of a predicted human gtpase in complex with gdp Resolution 2.10 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	A	I	I	A	H	V	D	H	G	K	T	T	L	V	D	K	L	L	Q	Q	S	G	T	F	D	S	R	A	E	T	Q	E	R	V	M	D	S	N	D	L	E	K	E	R	G	I	T	I	L	A	K	N	T	A	I	K	W	N	D	Y	R	I	N	I	V	D	T	P	G	H	A	D	F	G	G	E	V	E
Query Conservation
Alig confidence																						.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	V	I	I	I	G	S	R	G	V	G	K	T	S	L	M	E	R	F	T	.	.	D	S	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	D	F	K	I	K	T	V	E	L	R	G	K	K	I	R	L	Q	I	W	D	T	A	G	Q	E	R	F	N	S	I	T	S
Template Known Secondary structure								S	T	T	S	S										.	.				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T											T	T													S	G	G	G
Template Predicted Secondary structure																						.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.																					.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		R	V	M	S	M	V	D	S	V	L	L	V	V	D	A	F	D	G	P	M	P	Q	T	R	.	.	.	.	F	V	T	K	K	A	F	A	Y	G	L	K	P	I	V	V	I	N	K	V	D	R	P	G	A	R	P	D	W	V	V	D	Q	V	F	D	L	F	V	N	L	D	A	T	D	E	Q	L	D	F	P	I
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.																																							.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.
Template Sequence		A	Y	Y	R	S	A	K	G	I	I	L	V	Y	D	I	T	K	K	E	T	F	D	D	L	P	K	W	M	K	M	I	D	K	Y	A	S	E	D	A	E	L	L	L	V	G	N	K	L	D	C	E	T	D	R	E	I	T	R	Q	Q	G	E	K	F	A	Q	.	.	.	.	.	.	.	Q	I	T	G	M	R	F
Template Known Secondary structure								S								T	T							T												S		T	T										G	G	G	G	G	G			S											.	.	.	.	.	.	.	T	S	T	T
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.								.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	A	S	A	L	N	G	I	A	G	L	D	H	E	D	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	E	A	S	A	K	D	N	F	N	V	D	E	I	F	L	K	L
Template Known Secondary structure					B	T	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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