Job Description P32132 Confidence 98.15% Date Thu Jan 5 11:49:17 GMT 2012 Rank 238 Aligned Residues 159 % Identity 21% Template c1z06A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:ras-related protein rab-33b; PDBTitle: gppnhp-bound rab33 gtpase Resolution 1.81 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	R	N	I	A	I	I	A	H	V	D	H	G	K	T	T	L	V	D	K	L	L	Q	Q	S	G	T	F	D	S	R	A	E	T	Q	E	R	V	M	D	S	N	D	L	E	K	E	R	G	I	T	I	L	A	K	N	T	A	I	K	W	N	D	Y	R	I	N	I	V	D	T	P	G	H	A	D	F	G	G
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	F	K	I	I	V	I	G	D	S	N	V	G	K	T	C	L	T	Y	R	F	C	A	G	R	F	P	D	R	T	E	A	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	D	F	R	E	R	A	V	D	I	D	G	E	R	I	K	I	Q	L	W	D	T	A	G	Q	E	R	F	R	K
Template Known Secondary structure												T	T	S	S											S	S			S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	S											T	T													S					T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.															.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
			84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.																																				.	.	.	.	.
Query SS confidence		.																																				.	.	.	.	.
Query Sequence		.	E	V	E	R	V	M	S	M	V	D	S	V	L	L	V	V	D	A	F	D	G	P	M	P	Q	T	R	F	V	T	K	K	A	F	A	.	.	.	.	.	Y	G	L	K	P	I	V	V	I	N	K	V	D	R	P	G	A	R	P	D	W	V	V	D	Q	V	F	D	L	F	V	N	L	D	A	T	D	E	Q
Query Conservation		.																																				.	.	.	.	.
Alig confidence		.																																				.	.	.	.	.																				.											.	.	.	.	.	.	.
Template Conservation																																																														.											.	.	.	.	.	.	.
Template Sequence		S	M	V	Q	H	Y	Y	R	N	V	H	A	V	V	F	V	Y	D	M	T	N	M	A	S	F	H	S	L	P	A	W	I	E	E	C	K	Q	H	L	L	A	N	D	I	P	R	I	L	V	G	N	K	C	D	L	R	S	A	I	Q	.	V	P	T	D	L	A	Q	K	F	A	.	.	.	.	.	.	.	D	T
Template Known Secondary structure		T	T						T	T										T	T							T															S											T	T		G	G	G			.	S										.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.											.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.								.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	F	P	I	V	Y	A	S	A	L	N	G	I	A	G	L	D	H	E	D	M	A	E	D	M	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	S	M	P	L	F	E	T	S	A	K	N	P	N	D	N	D	H	V	E	A	I	F	M	T	L	A
Template Known Secondary structure		T	T								S	S	S	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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