Phyre 2 alignment of P32132 with c1kk3A

Job Description P32132
Confidence 100.00% Date Thu Jan 5 11:49:17 GMT 2012

Rank 32 Aligned Residues 274

% Identity 24% Template c1kk3A_

PDB info PDB header:translation Chain: A: PDB Molecule:eif2gamma; PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.									.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.
Query Sequence	N	I	A	I	I	A	H	V	D	H	G	K	T	T	L	V	D	K	L	L	.	.	.	.	.	.	.	.	Q	Q	S	G	T	F	D	S	R	A	E	T	Q	E	R	V	M	D	S	N	D	L	E	K	E	R	G	I	T	I	L	A	K	N	T	A	I	K	W	N	D	Y	R	I	N	I	V	D	T	P	G	H
Query Conservation																					.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	N	I	G	M	V	G	H	V	D	H	G	K	T	T	L	T	K	A	L	T	G	V	W	T	D	S	E	E	L	R	R	G	I	T	I	K	I	G	F	A	D	A	E	I	R	R	C	P	N	C	G	R	Y	S	T	S	P	V	C	P	Y	C	G	H	E	T	E	F	V	R	R	V	S	F	I	D	A	P	G	H
Template Known Secondary structure						S	S	T	T	S	S										T							T	T	S	S		S	S	S													T	T	T					S	S	S	B		T	T	T			B													S	S
Template Predicted Secondary structure
Template SS confidence
	12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																												.																		.
Query SS confidence																												.																		.
Query Sequence	A	D	F	G	G	E	V	E	R	V	M	S	M	V	D	S	V	L	L	V	V	D	A	F	D	G	P	.	M	P	Q	T	R	F	V	T	K	K	A	F	A	Y	G	L	K	.	P	I	V	V	I	N	K	V	D	R	P	G	A	R	P	D	W	V	V	D	Q	V	F	D	L	F	V	N	L	D	A	T	D	E
Query Conservation																												.																		.
Alig confidence																												.																		.													.	.	.
Template Conservation																																																											.	.	.
Template Sequence	E	A	L	M	T	T	M	L	A	G	A	S	L	M	D	G	A	I	L	V	I	A	A	N	E	P	C	P	R	P	Q	T	R	E	H	L	M	A	L	Q	I	I	G	Q	K	N	I	I	I	A	Q	N	K	I	E	L	V	D	.	.	.	K	E	K	A	L	E	N	Y	R	Q	I	K	E	F	I	E	G	T	V
Template Known Secondary structure											G	G	G		S								T	T	S		S																T											G	G	G	S		.	.	.																T	T	S	T
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
	94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.				.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170

	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.						.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																														.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.
Query Sequence	Q	L	D	F	P	I	V	Y	A	S	A	L	N	G	I	A	G	L	D	H	E	D	M	A	E	D	M	T	P	L	Y	Q	A	I	V	D	H	V	P	A	P	D	V	D	L	D	G	P	F	Q	M	Q	I	S	Q	L	D	Y	N	S	Y	.	.	.	.	.	V	G	V	I	G	I	G	R	I	K	R	G	K	V
Query Conservation																																																														.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.
Template Sequence	A	E	N	A	P	I	I	P	I	S	A	L	H	G	A	.	.	.	.	.	.	.	.	.	.	N	I	D	V	L	V	K	A	I	E	D	F	I	P	T	P	K	R	D	P	N	K	P	P	K	M	L	V	L	R	S	F	D	V	N	K	P	G	E	K	L	V	G	G	V	L	G	G	S	I	V	Q	G	K	L
Template Known Secondary structure	T	T	T							B	T	T	T	T	B	.	.	.	.	.	.	.	.	.	.	T												S							T	T	S													S																		S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.
Template SS confidence
	171	.	.	.	.	.	.	.	.	180	.	.	.	.	.											.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

	232	.	.	.	.	.	.	.	240	.	.	.	.										.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.						.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.																																	.	.	.	.	.					.	.
Query SS confidence														.	.	.	.	.	.	.	.	.																																	.	.	.	.	.					.	.
Query Sequence	K	P	N	Q	Q	V	T	I	I	D	S	E	G	.	.	.	.	.	.	.	.	.	K	T	R	N	A	K	V	G	K	V	L	G	H	L	G	L	E	R	I	E	T	D	L	A	E	A	G	D	I	V	A	I	.	.	.	.	.	T	G	L	G	.	.	E	L	N	I	S	D	T	V	C	D	T	Q	N	V	E
Query Conservation														.	.	.	.	.	.	.	.	.																																	.	.	.	.	.					.	.
Alig confidence														.	.	.	.	.	.	.	.	.														.	.	.	.																.	.	.	.	.					.	.
Template Conservation																																				.	.	.	.
Template Sequence	K	V	G	D	E	I	E	I	R	P	G	V	P	Y	E	E	H	G	R	I	K	Y	E	P	I	T	T	E	I	V	S	L	Q	A	G	.	.	.	.	G	Q	F	V	E	E	A	Y	P	G	G	L	V	G	V	G	T	K	L	D	P	Y	L	T	K	G	D	L	M	A	G	N	V	V	G	K	P	G	K	L	P
Template Known Secondary structure		T	T														T	T																	T	.	.	.	.	T				S				S	S	S							S	S		G	G	G	T	G	G	G	T	T	T	T						T	T		S
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
	244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.					.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

	296	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	P	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	320	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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