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Job DescriptionP32132
Confidence100.00%DateThu Jan 5 11:49:17 GMT 2012
Rank23Aligned Residues277
% Identity22%Templatec1g7tA_
PDB info PDB header:translationChain: A: PDB Molecule:translation initiation factor if2/eif5b; PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4... ..10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  KLRN. . IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF
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Template Sequence  KIRSPIVSVLGHVDHGKTTLLDHIRGSAVA. . SRITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF
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STTSST..T


TTS
GGGTT
GGGGT



TTT
G
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   2.......10.........20.........30. ........40.........50.........60.........70.........
 
   82.......90.........100.........110.........120.........130...... ...
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Query Sequence  GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGAR. . . . . . . . . . . . . . . . . . . . . . PDW
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Template Sequence  TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT
Template Known Secondary structure  GGSTTS
STTT


TT


GGGSTT



TT

TTS
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   140.........150....... ..160.........170.........180.........190.........200.........210.
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Query Sequence  VVDQVFDLFVNLDATDEQ. . . . . . . . LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQ
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Template Sequence  KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY. . . . . LREQLKIEEDSPARGTILE
Template Known Secondary structure  TT

TTT
S
TTTS

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TT.....
SGGG
TTSB
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   164.....170.........180.........190.........200.........210......... 220.........230........
 
   212.......220.........230.........240.........250.........260... ......270.........280.......
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Query Sequence  LDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERI. . . . ETDLAEAGDIVAITGLGELNISDT
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Template Sequence  VKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVIST. RIRSLLKPRPSRKKFQKVDEVVAAAGIKIVAPGIDDVMAGSP
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TTS
STT
BSSS.
S




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   239240.........250.........260.........270..... ....280.........290.........300.........310.......
 
   288
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Query Sequence  V
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Template Sequence  L
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   324
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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