 |
Job Description | P76546 | Confidence | 27.19% | Date | Thu Jan 5 12:24:22 GMT 2012 |
Rank | 54 | Aligned Residues | 62 |
% Identity | 21% | Template | d1j1va_ |
SCOP info | DNA/RNA-binding 3-helical bundle
| TrpR-like
| Chromosomal replication initiation factor DnaA C-terminal domain IV
|
Resolution | 2.10 |
|
 |
  |   |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | K | K | R | G | R | P | A | K | Y | N | E | K | I | A | T | Q | I | V | L | L | V | S | E | G | Y | S | L | R | K | I | S | M | M | P | G | M | P | S | H | R | Q | M | M | R | . |
. |
. |
. |
. |
. |
. |
W | Q | L | E | H | M | D | F | R | E | G | I | A | W | M | S | W | L |
Query Conservation |   |
  |
|
|   |
|
|
|
|   |
|
|   |   |
|
|
|
|
|
|   |
|
|
|   |
|
|
|
|
|   |
|
|   |
|
|
|
|
|   |   |   |
|
|   |
| . | . | . | . | . | . | . |
|
|   |   |   |   |
|
|
|
|
|
|
|   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |   |
|   |   |
|
|   |
|
|
|
|
|   |
|   |   |   | . |   |   |
|
|   |   |
|
|   |   |
|
|   |
|
|
|
|
|
|   |   |
|   |   |
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |   |
Template Sequence |   |
S | K | R | R | S | R | S | V | A | R | P | R | Q | X | A | X | A | L | A | K | E | L | T | . |
N | H | S | L | P | E | I | G | D | A | F | G | G | R | D | H | T | T | V | L | H | A | C | R | K | I | E | Q | L | R | E | E | S | H | D | I | K | E | D | F | S | N | L | I | R | T |
Template Known Secondary structure |   |
S |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | . |
|
|
|  |  |  |  |  |  |  | T | T | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
396 | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | |
. | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|