Job Description P77390 Confidence 100.00% Date Thu Jan 5 12:28:27 GMT 2012 Rank 1 Aligned Residues 199 % Identity 15% Template c3gmiA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0348 protein mj0951; PDBTitle: crystal structure of a protein of unknown function from2 methanocaldococcus jannaschii Resolution 1.91 Å

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		130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure														.	.																																											.	.	.	.	.
Query SS confidence														.	.																																											.	.	.	.	.
Query Sequence		L	K	R	Y	A	E	S	L	K	K	F	R	.	.	H	P	G	N	K	I	G	C	I	V	M	N	A	N	P	F	T	N	G	H	R	Y	L	I	Q	Q	A	A	A	Q	C	D	W	L	H	L	F	L	V	K	E	D	.	.	.	.	.	S	S	R	F	P	Y	E	D	R	L	D	L	V	L	K	G	T	A	D
Query Conservation														.	.																																											.	.	.	.	.
Alig confidence														.	.																														.	.												.	.	.	.	.
Template Conservation																																													.	.
Template Sequence		F	K	D	F	K	K	I	V	E	E	I	K	E	R	E	N	K	D	K	I	V	C	D	F	T	E	Y	N	P	L	H	K	G	H	K	Y	A	L	E	K	G	K	E	.	.	H	G	I	F	I	S	V	L	P	G	P	L	E	R	S	G	R	G	I	P	Y	F	L	N	R	Y	I	R	A	E	M	A	I	R	A
Template Known Secondary structure																	T												T	T														T	.	.	S	S									T	T	S	B		T	T	S	S	B		S	S
Template Predicted Secondary structure																																													.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	P	R	L	T	V	H	R	G	S	E	Y	I	I	S	R	A	T	F	P	C	Y	F	I	K	E	Q	S	V	I	N	H	C	Y	T	E	I	D	L	K	I	F	R	Q	Y	L	A	P	A	L	G	V	T	H	R	F	V	G	T	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.															.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.															.	.	.	.
Template Sequence		G	A	D	I	V	V	E	G	P	P	M	G	I	M	G	S	G	Q	.	Y	M	R	C	L	I	K	M	F	Y	S	L	G	A	.	.	.	.	E	I	I	P	R	G	Y	I	P	E	K	T	M	E	K	V	I	D	C	I	N	K	G	Y	H	I	Q	V	K	P	Y	K	I	I	C	I	E	T	G	E	I	L	G
Template Known Secondary structure		T		S								G	G	G	S					.													T		.	.	.	.																						T	T							T	T					T	T	T
Template Predicted Secondary structure																				.															.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.					.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
							264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	F	C	R	V	T	A	Q	Y	N	Q	D	M	R	Y	W	L	E	T	P	T	I	S	A	P	P	I	E	L	V	E	I	E	R	L	R	Y	Q	E	M	P	I	S	A	S	R	V	R	Q	L	L	A	K	N	D	L	T	A	I	A	P	L	V	P	A	V	T	L	H	Y	L	Q	N	L	L	E
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.													.	.																							.	.	.	.
Template Conservation																			.	.																							.	.	.	.
Template Sequence		E	K	L	N	I	D	N	Y	V	I	A	S	M	S	Q	M	I	.	.	Y	K	L	N	R	E	G	L	K	F	N	P	K	F	V	F	V	K	R	L	E	G	.	.	.	.	I	S	G	T	K	I	R	E	A	I	F	S	G	K	F	E	D	I	K	N	M	L	P	K	T	T	L	S	I	L	K	E	L	Y	D
Template Known Secondary structure		S				G	G	G											.	.						T	T													S			.	.	.	.												T	T		G	G	G	T	G	G	G	S
Template Predicted Secondary structure																			.	.																							.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		339	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	G	K
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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