Job Description P77390 Confidence 99.27% Date Thu Jan 5 12:28:27 GMT 2012 Rank 121 Aligned Residues 156 % Identity 18% Template c1lw7A_ PDB info PDB header:transferase Chain: A: PDB Molecule:transcriptional regulator nadr; PDBTitle: nadr protein from haemophilus influenzae Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.													.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	K	I	G	C	I	V	M	N	A	N	P	F	T	N	G	H	R	Y	L	I	Q	Q	A	A	A	Q	C	D	W	L	H	L	F	L	V	K	E	.	.	.	.	.	.	.	.	.	.	.	.	D	S	S	R	F	P	Y	E	D	R	L	D	L	V	L	K	G	T	A	D	I	P	R	L	T	V	H	R	G	S
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	V	G	V	I	F	G	K	F	Y	P	V	H	T	G	H	I	N	X	I	Y	E	A	F	S	K	V	D	E	L	H	V	I	V	C	S	D	T	V	R	D	L	K	L	F	Y	D	S	K	X	K	R	X	P	T	V	Q	D	R	L	R	W	X	Q	Q	I	F	K	Y	Q	K	N	Q	I	F	I	H	H	L
Template Known Secondary structure												S	S														T	T		S																				T	T		S	S															T	S	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	I	I	S	R	A	T	F	P	C	Y	F	I	K	E	Q	S	V	I	N	H	C	Y	T	E	I	D	L	K	I	F	R	Q	Y	L	A	P	A	L	G	V	T	H	R	F	V	G	T	E	P	F	C	R	V	T	A	Q	Y	N	Q	D	M	R	Y	W	L	E	T	P	T	I	S	A	P	P	I	E	L	V
Query Conservation
Alig confidence			.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Sequence		V	.	.	.	.	E	D	G	I	P	S	Y	P	N	G	W	Q	S	W	S	E	A	V	K	T	L	F	H	E	K	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	P	S	I	V	F	S	S	E	P	Q	D	K	A	P	Y	E	K	Y	L	G	.	.	.	.	.	.	.	.	L	E	V	S
Template Known Secondary structure			.	.	.	.		S	S	S			T	T	S																T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S					S		G	G	G								T		.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template SS confidence
		138					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.																.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.									.	.	.	190
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	E	R	L	R	Y	Q	E	M	P	I	S	A	S	R	V	R	Q	L	L	A	K	N	D	L	T	A	I	A	P	L	V	P	A	V	T	L	H	Y	L
Query Conservation
Alig confidence					.																					.	.	.	.	.
Template Conservation					.																					.	.	.	.	.
Template Sequence		L	V	D	.	P	D	R	T	F	F	N	V	S	A	T	K	I	R	T	T	P	F	Q	Y	.	.	.	.	.	W	K	F	I	P	K	E	A	R	P	F	F
Template Known Secondary structure					.	S	S			S	S											G	G	G	G	.	.	.	.	.	G	G	G	S		T	T	T	G	G	G	T
Template Predicted Secondary structure					.																					.	.	.	.	.
Template SS confidence
		191	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.						.	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions