Job Description P77804 Confidence 6.27% Date Thu Jan 5 12:32:59 GMT 2012 Rank 98 Aligned Residues 158 % Identity 10% Template c3a1zC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:hemolymph juvenile hormone binding protein; PDBTitle: crystal structure of juvenile hormone binding protein from silkworm Resolution 2.59 Å

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		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	N	A	D	R	D	G	K	A	I	S	L	S	G	E	A	Q	S	G	R	I	D	A	V	N	E	Y	N	Q	K	V	Q	L	T	F	N	N	L	K	T	D	G	S	S	T	L	A	S	F	G	E	R	V	G	N	Q	K	L	S	L	E	K	M	T	I	S	V	E	G	K	E	L	A	L	L	E	G	M	E
Query Conservation
Alig confidence										.																		.	.	.	.	.	.																		.															.
Template Conservation										.																		.	.	.	.	.	.																		.															.
Template Sequence		S	L	D	V	I	A	P	S	.	D	A	G	I	V	I	R	F	K	N	L	N	I	T	G	L	K	.	.	.	.	.	.	N	Q	Q	I	S	D	F	Q	M	D	T	K	A	K	T	V	L	.	L	K	T	K	A	D	L	H	I	V	G	D	I	V	.	I	E	L	T	E	Q	S	K	S	F	T	G	L	Y	T
Template Known Secondary structure								T	T	.																G	G	.	.	.	.	.	.	G										T	T	T	T				.															.				G	G	G	T
Template Predicted Secondary structure										.																		.	.	.	.	.	.																		.															.
Template SS confidence
		47	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.							.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.						.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																.	.	.	.	.
Query SS confidence																.	.	.	.	.
Query Sequence		I	S	G	K	S	D	L	V	N	D	G	K	T	I	.	.	.	.	.	N	S	Q	L	D	Y	S	L	N	S	L	K	V	Q	N	Q	D	L	G	S	G	K	L	T	L	K	V	G	Q	I	D	G	E	A	W	H	Q	F	S	Q	Q	Y	N	A	Q	T	Q	A	L	L	A	Q	P	E	I	A	N	N	P	E	L
Query Conservation																.	.	.	.	.
Alig confidence																.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.
Template Sequence		A	D	T	N	V	I	G	A	V	R	Y	G	Y	N	L	K	N	D	D	N	G	V	Q	H	F	E	V	Q	P	E	T	F	T	C	E	S	I	G	E	P	K	I	T	L	S	S	D	L	S	S	A	L	E	K	D	S	G	N	E	P	L	K	T	L	R	Q	A	A	I	.	.	.	.	.	.	.	.	.	C	K
Template Known Secondary structure																				T	T	S																																				T													.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.										.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	E	K	V	T	E	A	F	F	S	A	L	P	L	M	L	K	G	D	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	E	A	C	Y	I	S	V	V	H	N	I	R	A	S	A	K	I	L	P
Template Known Secondary structure																					S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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