Job Description P16676 Confidence 100.00% Date Thu Jan 5 11:35:17 GMT 2012 Rank 58 Aligned Residues 217 % Identity 23% Template c3pihA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna Resolution 2.90 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																														.																													.	.											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.																													.	.											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	D	I	S	L	D	I	P	S	G	Q	M	V	A	L	L	G	P	S	G	S	G	K	T	T	L	L	.	R	I	I	A	G	L	E	H	Q	T	S	G	H	I	R	F	H	G	T	D	V	S	R	L	H	A	R	D	.	.	R	K	V	G	F	V	F	Q	H	Y	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.																													.	.											.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.																													.	.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	N	I	D	V	E	I	P	L	G	V	F	V	C	V	T	G	V	S	G	S	G	K	S	S	L	V	M	E	T	L	Y	P	A	L	M	N	L	L	H	K	T	K	L	P	A	G	E	F	D	S	I	E	G	H	E	N	I	D	K	M	I	A	I	D	Q	S	P	I	G	R	T	P	R	S	N	P	A	T
Template Known Secondary structure				S							S	S	S							S	T	T	S	S								T																				S					G	G	G									S							T	T
Template Predicted Secondary structure
Template SS confidence
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.
																																																																												84	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	F	R	H	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	T	K	V	F	D	E	I	R	S	L	F	A	M	T	P	A	A	K	A	R	G	Y	N	K	S	R	F	S	F	N	L	K	G	G	R	C	E	A	C	Q	G	Q	G	Y	V	K	I	E	M	L	F	L	P	D	V	Y	V	E	C	D	V	C	K	G	K	R	Y	N	R	E	T	L	E	I	T	Y	K	G	K
Template Known Secondary structure			S	S										T	T	S						S	S			G	G	G	G		T	T	S	T	T	T	B		T	T	T	T	T	S	S							T	T	S								T	T	T	T	T	S		B		T	T	G	G	G			B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																								.																														.	.	.
Query SS confidence																																								.																														.	.	.
Query Sequence		T	V	F	D	N	I	A	F	G	L	T	V	L	P	R	R	E	R	P	N	A	A	A	I	K	A	K	V	T	K	L	L	E	M	V	Q	L	A	.	H	L	A	D	R	Y	P	A	Q	L	S	G	G	Q	K	Q	R	V	A	L	A	R	A	L	A	V	E	P	Q	.	.	.	I	L	L	L	D	E	P	F	G
Query Conservation																																								.																														.	.	.
Alig confidence																											.	.												.																														.	.	.
Template Conservation																											.	.
Template Sequence		N	I	S	D	I	L	D	M	T	V	D	E	A	L	E	F	F	K	N	I	P	S	I	K	R	.	.	T	L	Q	V	L	H	D	V	G	L	G	Y	V	K	L	G	Q	P	A	T	T	L	S	G	G	E	A	Q	R	I	K	L	A	S	E	L	R	K	R	D	T	G	R	T	L	Y	I	L	D	E	P	T	V
Template Known Secondary structure								S	S	B								T	T	T							.	.								T	T	G	G	G	S	B	T	T			S	T	T																T	S				S	S							S	T	T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.			.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.
Query Sequence		A	L	D	A	Q	V	R	K	E	L	R	R	W	L	R	Q	L	H	E	E	L	K	F	T	S	V	F	V	T	H	D	Q	E	E	A	T	E	V	A	D	R	V	V	V	M	.	.	.	.	.	.	S	Q	G	N	I	E	Q	A	D	A	P	D	Q	V	W	R	E	P	A	T	R	F	V	L	E	F	M	G	E
Query Conservation																																															.	.	.	.	.	.
Alig confidence																			.															.													.	.	.	.	.	.																					.
Template Conservation																			.															.																																							.
Template Sequence		G	L	H	F	E	D	V	R	K	L	V	E	V	L	H	R	L	.	V	D	R	G	N	T	V	I	V	I	E	H	N	L	.	D	V	I	K	N	A	D	H	I	I	D	L	G	P	E	G	G	K	E	G	G	Y	I	V	A	T	G	T	P	E	E	I	A	K	N	P	H	S	.	Y	T	G	R	F	L	K	N
Template Known Secondary structure		T																	.			T	T											.				T	T		S							S	S	S	G	G	G									S						S		T	T		.							T	T
Template Predicted Secondary structure																			.															.																																							.
Template SS confidence
		838	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.		.	.	.	.	.	860	.	.	.	.	.	.	.	.		.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.		.	.	.	910	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions