Job Description P16676 Confidence 98.80% Date Thu Jan 5 11:35:17 GMT 2012 Rank 86 Aligned Residues 205 % Identity 30% Template c3auyB_ PDB info PDB header:recombination Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: crystal structure of rad50 bound to adp Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		M	S	I	E	I	A	N	I	K	.	K	S	F	G	R	T	Q	V	L	N	D	I	S	L	D	I	P	S	G	Q	M	V	A	L	L	G	P	S	G	S	G	K	T	T	L	L	R	I	I	A	G	L	E	H	Q	T	S	G	H	I	R	F	H	G	T	D	V	S	R	L	H	A	R	D	R	K	V	G	F	V
Query Conservation											.
Alig confidence											.							.	.	.											.
Template Conservation																		.	.	.											.
Template Sequence		M	S	M	I	L	K	E	I	R	M	N	N	F	K	S	H	.	.	.	V	N	S	R	I	K	F	E	K	G	.	I	V	A	I	I	G	E	N	G	S	G	K	S	S	I	F	E	A	V	F	F	A	L	F	G	A	G	S	F	N	Y	D	T	I	I	T	K	G	K	K	S	V	Y	V	E	L	D	F	E	V
Template Known Secondary structure															T	T		.	.	.									S		.								T	T	S	S															S					G	G	G	T	B		T	T		S
Template Predicted Secondary structure																		.	.	.											.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	Q	H	Y	A	L	F	R	H	M	T	V	F	D	N	I	A	F	G	L	T	V	L	P	R	R	E	R	P	N	A	A	A	I	K	A	K	V	T	K	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	N	N	Y	K	I	I	R	E	Y	D	S	G	R	G	G	A	K	L	Y	K	N	G	K	P	Y	A	T	T	I	S	A	V	N	K	A	V	N	E	I	L	G	V	D	R	N	M	F	L	N	S	I	Y	I	K	Q	G	E	I	A	K	F	L	S	L	K	P	S	E	K	L	E	T	V	A	K	L	L	G
Template Known Secondary structure		T	T											T	T									T	T						S														S													T	T								S														T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	E	F	E	K	C	Y	Q	K	M	G	E	I	V	K	E	Y	E	K	R	L	E	R	I	E	G	E	L	N	Y	N	L	E	K	E	K	E	K	L	T	K	F	V	E	Y	L	D	K	V	R	R	I	F	G	R	N	G	F	Q	A	Y	L	R	E	K	Y	V	P	L	I	Q	K	Y	L	N	E	A	F	S
Template Known Secondary structure																																		T	T																				T	T	T	T								T	T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
																	122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.								.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	M	V	Q	L	A	H	L	A	D	R	Y	P	A	Q	L	S	G	G	Q	K	Q	R	V	A	L	A	R	A	L	A	.	.	.	.	.	.	.	V	E	P	Q	I	L	L	L	D	E	P	F	G	A	L	D	A	Q	V	R	K	E	L	R	R	W	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	F	D	L	P	Y	S	F	V	E	L	T	K	D	F	E	V	R	V	H	A	P	N	G	V	L	T	I	D	N	L	S	G	G	E	Q	I	A	V	A	L	S	L	R	L	A	I	A	N	A	L	I	G	N	R	V	E	C	I	I	L	D	E	P	T	V	Y	L	D	E	N	R	R	A	K	L	A	E	I	F
Template Known Secondary structure			T	T		S		S						T	T	T							T	T					G	G	G	S																						S	S			S						S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		885	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	L	H	E	E	L	K	F	T	S	V	F	V	T	H	D	Q	E	E	A	T	E	V	A	D	R	V	V	V	M	S	Q
Query Conservation
Alig confidence				.	.																.
Template Conservation				.	.																.
Template Sequence		R	K	.	.	V	K	S	I	P	Q	M	I	I	I	T	H	H	R	E	.	L	E	D	V	A	D	V	I	I	N	V	K	K
Template Known Secondary structure				.	.			S	S	S							S		G	G	.	G	G	G	G		S
Template Predicted Secondary structure				.	.																.
Template SS confidence
		965	.			.	.	.	970	.	.	.	.	.	.	.	.	.	980	.		.	.	.	.	.	.	.	.	990	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions