Job Description P16676 Confidence 98.63% Date Thu Jan 5 11:35:17 GMT 2012 Rank 92 Aligned Residues 137 % Identity 23% Template c2o8dB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh6; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair Resolution 3.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.							.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.										50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		I	E	I	A	N	I	K	K	S	F	G	R	T	Q	V	L	N	D	I	S	L	D	.	.	.	.	.	.	I	P	S	G	Q	M	V	A	L	L	G	P	S	G	S	G	K	T	T	L	L	R	I	I	A	.	.	.	.	.	.	.	.	.	G	L	E	H	Q	T	S	G	H	I	R	F	H	G	T	D	V	S
Query Conservation																								.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	L	K	G	S	R	H	P	C	G	D	D	F	I	P	N	D	I	L	I	G	C	E	E	E	E	Q	E	N	K	A	Y	C	V	L	V	T	G	P	N	M	G	G	K	S	T	L	M	R	Q	A	G	L	L	A	V	M	A	Q	M	G	C	Y	V	P	A	E	V	C	R	L	T	P	I	D	R	V	F	T
Template Known Secondary structure																											S	T	T										B			T	T	S	S																T	T	T			B	S	S	S								S	B
Template Predicted Secondary structure
Template SS confidence
		1089	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	H	A	R	D	R	K	V	G	F	V	F	Q	H	Y	A	L	F	R	H	M	T	V	F	D	N	I	A	F	G	L	T	V	L	P	R	R	E	R	P	N	A	A	A	I	K	A	K	V	T	K	L	L	E	M	V	Q	L	A	H	L	A	D	R	Y	P	A	Q	L	S	G	G	Q	K	Q	R	V	A	L
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	F	V	E	L	S	E	T
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1176	.	.																																																																				.	1180	.	.	.	.	.	.	.	.
		148	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure						.	.																									.
Query SS confidence						.	.																									.
Query Sequence		A	R	A	L	.	.	A	V	E	P	Q	I	L	L	L	D	E	P	F	G	A	L	D	A	Q	V	R	K	E	L	.	R	R	W	L	R	Q	L	H	E	E	L	K	F	T	S	V	F	V	T	H	D	Q	E	E	A	T	E	V	A	D	R
Query Conservation						.	.																									.
Alig confidence						.	.																									.
Template Conservation
Template Sequence		A	S	I	L	M	H	A	T	A	H	S	L	V	L	V	D	E	L	G	R	G	T	A	T	F	D	G	T	A	I	A	N	A	V	V	K	E	L	A	E	T	I	K	C	R	T	L	F	S	T	H	Y	H	S	L	V	E	D	Y	S	Q	N
Template Known Secondary structure										T	T								S		T	T	S																			T	S																	T	S	S
Template Predicted Secondary structure
Template SS confidence
		1198	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions