Job Description P16676 Confidence 100.00% Date Thu Jan 5 11:35:17 GMT 2012 Rank 10 Aligned Residues 348 % Identity 35% Template c2d62A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:multiple sugar-binding transport atp-binding PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.							.	.	70	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.
Query Sequence		M	S	I	E	I	A	N	I	K	K	S	F	G	R	T	Q	V	L	N	D	I	S	L	D	I	P	S	G	Q	M	V	A	L	L	G	P	S	G	S	G	K	T	T	L	L	R	I	I	A	G	L	E	H	Q	T	S	G	H	I	R	F	H	G	T	D	V	S	.	.	.	.	.	.	R	L	H	A	R	D	R
Query Conservation																																																																					.	.	.	.	.	.
Alig confidence																																																																					.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	V	K	L	I	N	I	W	K	R	F	G	D	V	T	A	V	K	D	L	S	L	E	I	K	D	G	E	F	L	V	L	L	G	P	S	G	C	G	K	T	T	T	L	R	X	I	A	G	L	E	E	P	T	R	G	Q	I	Y	I	E	D	N	L	V	A	D	P	E	K	G	V	F	V	P	P	K	E	R
Template Known Secondary structure			S											T	T													T	T								S	T	T	S	S										T	S	S			S							T	T						G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	G	F	V	F	Q	H	Y	A	L	F	R	H	M	T	V	F	D	N	I	A	F	G	L	T	V	L	P	R	R	E	R	P	N	A	A	A	I	K	A	K	V	T	K	L	L	E	M	V	Q	L	A	H	L	A	D	R	Y	P	A	Q	L	S	G	G	Q	K	Q	R	V	A	L	A	R	A	L	A	V	E
Query Conservation
Alig confidence																														.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		D	V	A	X	V	F	Q	S	Y	A	L	Y	P	H	X	T	V	Y	D	N	I	A	F	P	L	K	L	R	.	.	.	.	K	V	P	K	Q	E	I	D	K	R	V	R	E	V	A	E	X	L	G	L	T	E	L	L	N	R	K	P	R	E	L	S	G	G	Q	R	Q	R	V	A	L	G	R	A	I	I	R	R
Template Known Secondary structure		T							S					T	T	S												T	T	.	.	.	.	T																	T	T		G	G	G	T	T			G	G	G	S															S	S
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	I	L	L	L	D	E	P	F	G	A	L	D	A	Q	V	R	K	E	L	R	R	W	L	R	Q	L	H	E	E	L	K	F	T	S	V	F	V	T	H	D	Q	E	E	A	T	E	V	A	D	R	V	V	V	M	S	Q	G	N	I	E	Q	A	D	A	P	D	Q	V	W	R	E	P	A	T	R	F	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	K	V	F	L	X	D	E	P	L	S	N	L	D	A	K	L	R	V	K	X	R	A	E	L	K	K	L	Q	R	Q	L	G	V	T	T	I	Y	V	T	H	D	Q	V	E	A	X	T	X	G	D	R	I	A	V	X	N	K	G	E	L	Q	Q	V	G	T	P	D	E	V	Y	Y	K	P	V	N	T	F	V	A
Template Known Secondary structure			S						S	T	T	T	T																					T								S										S							T	T														S		S	B
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		235	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260										.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.					.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.																					.	.	.	.	.	.	.	.	.																								.	.	.	.
Query SS confidence								.	.																					.	.	.	.	.	.	.	.	.																								.	.	.	.
Query Sequence		E	F	M	G	E	V	.	.	N	R	L	Q	G	T	I	R	G	G	Q	F	H	V	G	A	H	R	W	P	.	.	.	.	.	.	.	.	.	L	G	Y	T	P	A	Y	Q	G	P	V	D	L	F	L	R	P	W	E	V	D	I	S	.	.	.	.	R	R	T	S	L	D	S	P	L	P	V	Q	V	L	E	A
Query Conservation								.	.																					.	.	.	.	.	.	.	.	.																								.	.	.	.
Alig confidence								.	.																					.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation
Template Sequence		G	F	I	G	S	P	P	X	N	F	L	D	A	T	I	T	D	D	G	F	L	D	F	G	E	F	K	L	K	L	L	Q	D	Q	F	E	V	L	E	E	E	N	X	V	G	K	E	V	I	F	G	I	R	P	E	D	V	H	D	A	S	F	T	H	I	D	V	P	E	E	N	T	V	K	A	T	V	D	I	I
Template Known Secondary structure				S	S	S	S											T	T	S					S	S																T	T		T	T									G	G	G				G	G	G		S				T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	K	G	H	Y	T	Q	L	V	V	Q	P	L	G	W	Y	N	E	P	L	T	V	V	M	H	G	D	D	A	P	Q	R	G	E	R	L	F	V	G	L	Q	H	A	R	L	Y	N	G	D	E	R	I	E	T	R
Query Conservation
Alig confidence														.	.	.
Template Conservation														.	.	.
Template Sequence		E	N	L	G	G	E	K	I	V	H	L	R	.	.	.	R	G	N	I	S	F	T	A	K	F	P	K	E	S	K	V	R	E	G	D	E	V	S	V	V	F	D	X	K	K	I	H	I	F	R	K	D	T	E	K	A
Template Known Secondary structure					S	S								.	.	.		T	T									T	T					T	T									G	G	G						T	T	T		B	B
Template Predicted Secondary structure														.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.				.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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