Job Description P16676 Confidence 100.00% Date Thu Jan 5 11:35:17 GMT 2012 Rank 2 Aligned Residues 340 % Identity 38% Template c1vciA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	I	E	I	A	N	I	K	K	S	F	G	R	T	Q	V	L	N	D	I	S	L	D	I	P	S	G	Q	M	V	A	L	L	G	P	S	G	S	G	K	T	T	L	L	R	I	I	A	G	L	E	H	Q	T	S	G	H	I	R	F	H	G	T	D	V	S	R	L	H	A	R	D	R	K	V	G	F	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	V	K	L	E	N	L	T	K	R	F	G	N	F	T	A	V	N	K	L	N	L	T	I	K	D	G	E	F	L	V	L	L	G	P	S	G	C	G	K	T	T	T	L	R	M	I	A	G	L	E	E	P	T	E	G	R	I	Y	F	G	D	R	D	V	T	Y	L	P	P	K	D	R	N	I	S	M	V	F
Template Known Secondary structure														T	T													T	T									T	T	S	S										T	S	S			S							T	T				T	T	S		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	Y	A	L	F	R	H	M	T	V	F	D	N	I	A	F	G	L	T	V	L	P	R	R	E	R	P	N	A	A	A	I	K	A	K	V	T	K	L	L	E	M	V	Q	L	A	H	L	A	D	R	Y	P	A	Q	L	S	G	G	Q	K	Q	R	V	A	L	A	R	A	L	A	V	E	P	Q	I	L	L	L
Query Conservation
Alig confidence				.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.													.	.	.	.	.	.
Template Sequence		Q	H	.	.	.	.	.	.	M	T	V	Y	E	N	I	A	F	P	L	K	.	.	.	.	.	.	K	F	P	K	D	E	I	D	K	R	V	R	W	A	A	E	L	L	Q	I	E	E	L	L	N	R	Y	P	A	Q	L	S	G	G	Q	R	Q	R	V	A	V	A	R	A	I	V	V	E	P	D	V	L	L	M
Template Known Secondary structure				.	.	.	.	.	.									T	T			.	.	.	.	.	.																		T	T		G	G	G	T	T			G	G	G			S	S												T	T			S
Template Predicted Secondary structure				.	.	.	.	.	.													.	.	.	.	.	.
Template SS confidence
		91	.							.	.	.	.	.	.	.	100	.	.	.	.							.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		D	E	P	F	G	A	L	D	A	Q	V	R	K	E	L	R	R	W	L	R	Q	L	H	E	E	L	K	F	T	S	V	F	V	T	H	D	Q	E	E	A	T	E	V	A	D	R	V	V	V	M	S	Q	G	N	I	E	Q	A	D	A	P	D	Q	V	W	R	E	P	A	T	R	F	V	L	E	F	M	G	E	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		D	E	P	L	S	N	L	D	A	K	L	R	V	A	M	R	A	E	I	K	K	L	Q	Q	K	L	K	V	T	T	I	Y	V	T	H	D	Q	V	E	A	M	T	M	G	D	R	I	A	V	M	N	R	G	Q	L	L	Q	I	G	S	P	T	E	V	Y	L	R	P	N	S	V	F	V	A	T	F	I	G	A	P
Template Known Secondary structure			S	T	T	T	T	S																												S										S							T	T														S		S	B							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.					.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure		.																									.	.	.	.																					.
Query SS confidence		.																									.	.	.	.																					.
Query Sequence		.	V	N	R	L	Q	G	T	I	R	G	G	Q	F	H	V	G	A	H	R	W	P	L	G	Y	.	.	.	.	T	P	A	Y	Q	G	P	V	D	L	F	L	R	P	W	E	V	D	I	S	.	R	R	T	S	L	D	S	P	L	P	V	Q	V	L	E	A	S	P	K	G	H	Y	T	Q	L	V	V	Q	P	L
Query Conservation		.																									.	.	.	.																					.
Alig confidence		.																									.	.	.	.																					.
Template Conservation
Template Sequence		E	M	N	I	L	E	V	S	V	G	D	G	Y	L	E	G	R	G	F	R	I	E	L	P	Q	M	D	L	L	K	D	Y	V	G	K	T	V	L	F	G	I	R	P	E	H	M	T	V	E	G	V	H	M	K	R	T	A	R	L	I	G	K	V	D	F	V	E	A	L	G	T	D	T	I	L	H	V	K	F	G
Template Known Secondary structure												S	S					T	T										T	T	G	G	G	B	T	S								G	G	G				S					S	S															S	S									T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	W	Y	N	E	P	L	T	V	V	M	H	G	D	D	A	P	Q	R	G	E	R	L	F	V	G	L	Q	H	A	R	L	Y	N	G	D	E	R	I	E	T	R
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence		D	.	.	.	E	L	V	K	V	K	L	P	G	H	I	P	I	E	P	G	R	E	V	K	V	I	M	D	L	D	M	I	H	V	F	D	K	D	T	E	K	A
Template Known Secondary structure		T	.	.	.									S						T	T									G	G	G						T	T	T		B	B
Template Predicted Secondary structure			.	.	.
Template SS confidence
		333				.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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