|   |
180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |
| . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | P | L | M | P | G | L | T | Q | L | V | L | K | L | E | T | L | G | W | K | V | A | I | A | S | G | G | F | T | F | F | A | E | Y | L | R | D | K | L | R | L | T | A | V | V | A | N | E | L | E | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
M | D | G | K | F | T | G | N | V | I | G | D | I | V | D | A | Q | Y | K |
Query Conservation |   |
  |   |
|   |
|   |   |   |
|   |
|   |   |
|
|   |   |
|
|   |
|   |
|
|
|
|   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|   |   |   |   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |   |
|   |   |   |
|   |   |
|
|   |   |
|
|
|
|   |
|
|
|
|
|   |   |   |
|
|   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
Template Sequence |   |
D | P | P | R | K | E | V | M | G | S | I | Q | L | C | R | D | A | G | I | R | V | I | M | I | T | G | D | N | K | G | T | A | I | A | I | C | R | R | I | G | I | F | G | E | N | E | E | V | A | D | R | A | Y | T | G | R | E | F | D | D | L | P | L | A | E | Q | R | E | A | C | R | R | A | C | C | F | A | R | V | E |
Template Known Secondary structure |   |
|
| B |
| T | T |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| S | S |
|  |  |  |  |  |  |  |  |  |  | T | T | S | S |
| T | T |
|
|
| T | T | T |  |  |  |  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  | S |
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
601 | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 |
  |
  |   |
250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | |
290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | K | T | L | T | R | L | A | Q | E | Y | E | I | P | L | A | Q | T | V | A | I | G | D | G | A | N | D | L | P | M | I | K | A | A | G | L | G | I | A | Y | . |
H | A | K | P | K | V | N | E | K | A | E | V | T | I | R | H | A | D | L | M | G | V | F | C | I | L | S |
Query Conservation |   |
  |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|
|   |
|
|
|   |
|
|   |   |
|
|
|
|
|
|   | . |
|
|   |
|   |
|   |   |   |
|
|   |
|
|   |   |   |
|
|   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |
|
|
|
|   |
|
|   |   |
|
|   |   |
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|
|   |   |   |   |
|   |   |
|   |   |   |
|   |
Template Sequence |   |
P | S | H | K | S | K | I | V | E | Y | L | Q | S | Y | D | E | I | T | A | M | T | G | D | G | V | N | D | A | P | A | L | K | K | A | E | I | G | I | A | M | G | S | G | T | A | V | A | K | T | A | S | E | M | V | L | A | D | D | N | F | S | T | I | V | A | A | V | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |
| S | G | G | G |  |  |  |  |  |  | S | S |  |  |  |  |  | T | T | S |
|  |  |  |  |  | T |
| S |  |  |  | T | T |
|
| T |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
681 | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . |
  |