Job Description P0AGB0 Confidence 97.99% Date Thu Jan 5 11:28:38 GMT 2012 Rank 140 Aligned Residues 127 % Identity 23% Template c3zvmA_ PDB info PDB header:hydrolase/transferase/dna Chain: A: PDB Molecule:bifunctional polynucleotide phosphatase/kinase; PDBTitle: the structural basis for substrate recognition by mammalian2 polynucleotide kinase 3' phosphatase Resolution 2.00 Å

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		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	T	P	G	L	L	V	M	D	M	D	S	T	A	I	Q	I	E	C	I	D	E	I	A	K	L	A	G	T	G	E	M	V	A	E	V	T	E	R	A	M	R	G	E	L	D	F	T	A	S	L	R	S	R	V	A	T	L	K	G	A	D	A	N	I	L	Q	Q	V	R	E	N	L	P	L	M	P	G	L
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	P	Q	G	K	V	A	A	F	D	L	D	G	T	L	I	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	G	K	V	F	P	T	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	W	R	I	L	Y	P	E	I
Template Known Secondary structure					S	S						S	B	T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S			S	S		S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T					S		T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.																			.	180	.	.	.	.	.	.	.	.																									.	190	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.													.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	Q	L	V	L	K	L	E	T	L	G	W	K	V	A	I	A	S	G	G	F	.	.	.	.	.	.	.	.	.	.	.	.	T	F	F	A	E	Y	L	R	D	K	L	R	L	T	A	V	V	A	N	E	L	E	I	M	D	G	K	F	T	G	N	V	I	G	D	I	V	D	A	Q	Y	K	A	K	T	L	T
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	K	K	L	Q	E	L	A	A	E	G	Y	K	L	V	I	F	T	N	Q	M	G	I	G	R	G	K	L	P	A	E	V	F	K	G	K	V	E	A	V	L	E	K	L	G	V	P	F	Q	V	L	V	A	T	H	A	G	.	.	.	.	.	.	.	.	.	.	.	.	L	N	R	K	P	V	S	G	M	W	D
Template Known Secondary structure											T	T														T	T	S	S																	T	S									S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	T	T	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.													.	.	.	.	260	.	.	.	.	.	.
		255	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.																		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	A	Q	E	Y	E	.	.	.	.	I	P	L	A	Q	T	V	A	I	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	N	D	L	P	M	I	K	A	A	G	L	G	I
Query Conservation									.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	L	Q	E	Q	A	N	E	G	I	P	I	S	V	E	D	S	V	F	V	G	D	A	A	G	R	L	A	N	W	A	P	G	R	K	K	K	D	F	S	C	A	D	R	L	F	A	L	N	V	G	L	P	F
Template Known Secondary structure							S	S	T	T					S	T	T						S				B		T	T		B	T	T	B		S			S												T
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions