Job Description P0AGB0 Confidence 99.94% Date Thu Jan 5 11:28:38 GMT 2012 Rank 18 Aligned Residues 193 % Identity 23% Template c3fvvA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein with unknown function from2 bordetella pertussis tohama i Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.										.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																				.																								.	.	.	.	.	.	.	.	.
Query SS confidence																				.																								.	.	.	.	.	.	.	.	.
Query Sequence		R	T	P	G	L	L	V	M	D	M	D	S	T	A	I	Q	I	E	.	C	I	D	E	I	A	K	L	A	G	T	G	E	M	V	A	E	V	T	E	R	A	M	.	.	.	.	.	.	.	.	.	R	G	E	L	D	F	T	A	S	L	R	S	R	V	A	T	L	K	G	A	D	A	N	I	L	Q	Q	V	R
Query Conservation																				.																								.	.	.	.	.	.	.	.	.
Alig confidence																				.																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	R	R	L	A	L	F	D	L	D	H	T	L	L	P	L	D	S	D	Y	Q	W	A	D	F	L	A	R	T	G	R	A	G	D	P	A	E	A	R	R	R	N	D	D	L	M	E	R	Y	N	R	G	E	L	T	A	E	Q	A	A	E	F	M	L	G	L	L	A	A	H	S	P	V	E	L	A	A	W	H
Template Known Secondary structure												B	T	T	T	B	S	S													T	T	S	S	S	S																		T		S															T	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		178								.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure			.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.
Query Sequence		E	.	.	.	.	.	.	.	N	L	P	L	M	P	G	L	T	Q	L	V	L	K	L	E	T	L	G	W	K	V	A	I	A	S	G	G	F	T	F	F	A	E	Y	L	R	D	K	L	R	L	T	A	V	V	A	N	E	L	E	I	M	D	G	K	F	T	G	N	V	I	G	D	I	V	D	A	Q	Y	K	A
Query Conservation			.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	F	M	R	D	V	I	R	P	S	L	T	V	Q	A	V	D	V	V	R	G	H	L	A	A	G	D	L	C	A	L	V	T	A	T	N	S	F	V	T	A	P	I	A	R	A	F	G	V	Q	H	L	I	A	T	D	P	E	Y	R	D	G	R	Y	T	G	R	I	E	G	T	P	S	F	R	E	G	K	V
Template Known Secondary structure								T	T	G	G	G															T	T								S	S												T	T													T	T								S	S		S	S	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		K	T	L	T	R	L	A	Q	E	Y	E	I	P	L	.	.	.	A	Q	T	V	A	I	G	D	G	A	N	D	L	P	M	I	K	A	A	G	L	G	I	A	Y	H	A	K	P	K	V	N	E	K	A	E
Query Conservation																.	.	.
Alig confidence																.	.	.
Template Conservation
Template Sequence		V	R	V	N	Q	W	L	A	G	M	G	L	A	L	G	D	F	A	E	S	Y	F	Y	S	D	S	V	N	D	V	P	L	L	E	A	V	T	R	P	I	A	A	N	P	S	P	G	L	R	E	I	A	Q
Template Known Secondary structure											T	T			G	G	G	S	S									G	G	G							S	S						S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions