Phyre 2 alignment of P38105 with c2vz8B

Job Description P38105
Confidence 99.73% Date Wed Jan 25 15:20:53 GMT 2012

Rank 86 Aligned Residues 286

% Identity 14% Template c2vz8B_

PDB info PDB header:transferase Chain: B: PDB Molecule:fatty acid synthase; PDBTitle: crystal structure of mammalian fatty acid synthase

Resolution 3.2 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence	P	T	P	S	A	G	E	V	R	V	K	V	K	L	A	G	I	C	G	S	D	S	H	I	Y	R	G	H	N	P	F	A	K	Y	P	R	V	I	G	H	E	F	F	G	V	I	D	A	V	G	E	G	V	E	.	S	A	R	V	G	E	R	V	A	V	D	P	V	V	S	C	G	H	C	Y	P	C	S	I	G
Query Conservation																																																							.
Alig confidence																																		.	.	.	.																		.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	P	A	S	C	Q	D	R	L	C	S	V	Y	Y	T	S	L	N	F	R	D	V	M	L	A	T	G	K	L	S	P	D	S	.	.	.	.	I	P	G	K	W	L	T	R	D	C	M	L	G	M	E	F	S	G	R	D	A	S	G	R	R	V	M	G	M	V	P	A	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	S	T	T	T																			T	S	S		G	G	G	.	.	.	.			S			S		S	S												T	T									S	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1555	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.					.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.

	99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence	K	P	N	V	C	T	T	L	A	V	L	G	V	H	A	D	G	G	F	S	E	Y	A	V	V	P	A	K	N	A	W	K	I	P	E	A	V	A	D	Q	Y	A	.	.	V	M	I	E	P	F	T	I	A	A	N	V	T	G	H	G	Q	P	T	E	N	D	T	V	L	V	Y	G	A	G	P	I	G	L	T	I
Query Conservation																																											.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	L	A	T	S	V	L	L	L	Q	H	A	T	W	E	V	P	S	T	W	T	L	E	E	A	A	S	V	P	I	V	Y	T	T	A	Y	Y	S	L	V	V	R	G	R	M	Q	P	G	E	S	V	L	I	H	S	G	S	G	G	V	G	Q	A
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	B	S						G	G	G						T	T	S						T	T													T	T	T	T				T	T								S	S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.

	177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																												.	.	.	.
Query SS confidence																												.	.	.	.
Query Sequence	V	Q	V	L	K	G	V	Y	N	V	K	N	V	I	V	A	D	R	I	D	E	R	L	E	K	A	K	.	.	.	.	E	S	G	A	D	W	A	I	N	N	S	Q	T	P	L	G	E	I	F	T	E	K	G	I	K	P	T	L	I	I	D	A	A	C	H	P	S	I	L	K	E	A	V	T	L	A	S	P	A
Query Conservation																												.	.	.	.
Alig confidence																												.	.	.	.
Template Conservation
Template Sequence	A	I	A	I	A	L	S	R	G	C	R	V	F	T	T	V	G	S	A	E	K	R	A	Y	L	Q	A	R	F	P	Q	L	D	E	T	C	F	A	N	S	R	D	T	S	F	E	Q	H	V	L	R	H	T	A	G	K	G	V	D	L	V	L	N	S	L	A	E	E	K	L	Q	A	S	V	R	C	L	A	Q	H
Template Known Secondary structure								T	T								S													T	T			S	T	T				S	S	S	S									T	T	T	T																				T	T
Template Predicted Secondary structure
Template SS confidence
	1684	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.	.	.	1760	.	.	.

	253	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.											.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure											.																								.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																								.	.	.	.	.	.	.	.	.	.
Query Sequence	A	R	I	V	L	M	G	F	S	S	.	E	P	S	E	V	I	Q	Q	G	I	T	G	K	E	L	S	I	F	S	S	R	L	N	.	.	.	.	.	.	.	.	.	.	A	N	K	F	P	I	V	I	D	W	L	S	K	G	L	I	K	P	E	K	L	I	T	H	T	F	D	F	Q	H	V	A	D	A	I	S
Query Conservation											.																								.	.	.	.	.	.	.	.	.	.
Alig confidence											.																								.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																																																																		.	.
Template Sequence	G	R	F	L	E	I	G	K	F	D	L	S	N	N	H	A	L	G	M	A	V	F	L	K	N	V	T	F	H	G	I	L	L	D	S	L	F	E	E	G	G	A	T	W	Q	E	V	S	E	L	L	K	A	G	I	Q	E	G	V	V	Q	P	L	K	C	.	.	T	V	F	P	R	T	K	V	E	A	A	F	R
Template Known Secondary structure													T	T					T	T	G	G	G	G	T								T					T	S																	T	T	T		S						.	.					S	S	T
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
	1764	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.			.	1830	.	.	.	.	.	.	.	.	.	1840	.

	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	F	E	Q	D	Q	K	H	C	C	K	V	L	L	T	F	S	E
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence	Y	M	A	Q	G	K	H	I	.	G	K	V	V	I	Q	V	R	E
Template Known Secondary structure				T	T			S	.	S						S	S
Template Predicted Secondary structure									.
Template SS confidence
	1842	.	.	.	.	.	.	.		1850	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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