Return to main results Retrieve Phyre Job Id

Job DescriptionP38105
Confidence100.00%DateWed Jan 25 15:20:53 GMT 2012
Rank20Aligned Residues332
% Identity19%Templatec1yqxB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:sinapyl alcohol dehydrogenase; PDBTitle: sinapyl alcohol dehydrogenase at 2.5 angstrom resolution
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1..... ...10.........20.........30.........40.........50.........60.........70.......
Predicted Secondary structure 
...



































Query SS confidence 





. . .






































































Query Sequence  MKSILI. . . EKPNQLAIVEREIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVESARV
Query Conservation 




 ...     
     
 
     





 
  

  
     
       
 
 
 
  
 
  

  
  
 
Alig confidence 





...






































































Template Conservation                
       
     





 
 


  
     
       
 
 
 
 

 

 

  
   

Template Sequence  VKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNV
Template Known Secondary structure 
STT





TT

TTTS


SSB





TT

S

T
Template Predicted Secondary structure 




































Template SS confidence 















































































   11........20.........30.........40.........50.........60.........70.........80.........90
 
   78.80....... ..90.........100.........110 .........120.........130......... 140........
Predicted Secondary structure 




.



















.......















.




Query SS confidence 









.






















. . . . . . .




























.








Query Sequence  GERVAVDPVV. SCGHCYPCSIGKPNVCTTLAVLG. . . . . . . VHADGGFSEYAVVPAKNAWKIPEAVADQY. AVMIEPFTI
Query Conservation 



      .                       .......       
                     .         
Alig confidence 









.






















.......




























.








Template Conservation 



         
                               
  
             
                 
Template Sequence  GDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGIT
Template Known Secondary structure  T

S

SSSTT
GGG
TT
SSSSB
TTS
B


SSBSGGG


TTS
GGGGT
Template Predicted Secondary structure 





















































Template SS confidence 















































































   91........100.........110.........120.........130.........140.........150.........160.........170
 
   149150.........160.........170.........180.........190.........200.........210.........220........
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  AANVTGHGQPTENDTVLVYGAGPIGLTIVQVLKGVYNVKNVIVADRIDERLEKAKESGADWAINNSQTPLGEIFTEKGIK
Query Conservation                                                                                  
Alig confidence 


































































...









Template Conservation                                                               

    ...          
Template Sequence  VYSPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRD. . . QEQMQAAAGT
Template Known Secondary structure  TT

STT


ST
S
GGGTT

STT
...TTT
Template Predicted Secondary structure 


























...


Template SS confidence 















































































   171........180.........190.........200.........210.........220.........230....... ..240.......
 
   229230.........240.........250.........260.........270.........280..... ....290.........300.......
Predicted Secondary structure 
























.








Query SS confidence 
























































.





















Query Sequence  PTLIIDAACHPSILKEAVTLASPAARIVLMGFSSEPSEVIQQGITGKELSIFSSRLN. ANKFPIVIDWLSKGLIKPEKLI
Query Conservation                                                      
    .         

  
 
     
Alig confidence 
























































.

















...
Template Conservation                                
                     
        
     
   
 

 ... 
Template Sequence  LDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKHNITA. . . D
Template Known Secondary structure 

SS


S



SS




TTT


S

TT


...
Template Predicted Secondary structure 
































...
Template SS confidence 















































































   248.250.........260.........270.........280.........290.........300.........310.........320... .
 
   308.310.........320.........330.........
Predicted Secondary structure 







Query SS confidence 































Query Sequence  THTFDFQHVADAISLFEQDQKHCCKVLLTFSE
Query Conservation       
    

   
       




   
Alig confidence 





















.








Template Conservation 
    

 
  
   
  
   .




 

 
Template Sequence  IEVISTDYLNTAMERLAKNDVR. YRFVIDVGN
Template Known Secondary structure 
GGGTT
SS.S
Template Predicted Secondary structure 




.


Template SS confidence 































   325....330.........340...... ...350.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions