Job Description P38105 Confidence 100.00% Date Wed Jan 25 15:20:53 GMT 2012 Rank 6 Aligned Residues 335 % Identity 21% Template c1ma0B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione-dependent formaldehyde dehydrogenase; PDBTitle: ternary complex of human glutathione-dependent formaldehyde2 dehydrogenase with nad+ and dodecanoic acid Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		M	K	S	I	L	I	E	K	P	N	.	Q	L	A	I	V	E	R	E	I	P	T	P	S	A	G	E	V	R	V	K	V	K	L	A	G	I	C	G	S	D	S	H	I	Y	R	G	H	N	P	F	A	K	Y	P	R	V	I	G	H	E	F	F	G	V	I	D	A	V	G	E	G	V	E	S	A	R	V	G	E
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		C	K	A	A	V	A	W	E	A	G	K	P	L	S	I	E	E	I	E	V	A	P	P	K	A	H	E	V	R	I	K	I	I	A	T	A	V	C	H	T	D	A	Y	T	L	S	G	A	D	P	E	G	C	F	P	V	I	L	G	H	E	G	A	G	I	V	E	S	V	G	E	G	V	T	K	L	K	A	G	D
Template Known Secondary structure							B		S	T	T	S														T	T																					T			T	T			S	S	B															T	T			S			T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	A	V	D	P	V	V	S	C	G	H	C	Y	P	C	S	I	G	K	P	N	V	C	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	V	L	G	V	H	A	D	G	G	F	S	E	Y	A	V	V	P	A	K	N	A	W	K	I	P	E	A	V	A	D	Q
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	I	P	L	Y	I	P	Q	C	G	E	C	K	F	C	L	N	P	K	T	N	L	C	Q	K	I	R	V	T	Q	G	K	G	L	M	P	D	G	T	S	R	F	T	C	K	G	K	T	I	L	H	Y	M	G	T	S	T	F	S	E	Y	T	V	V	A	D	I	S	V	A	K	I	D	P	L	A	P	L	D
Template Known Secondary structure							S	S				S	S	S	T	T	T	T		T	T						T	T						T	T			T	T	S			S				T	T				B			T	T	T			S	B	S						G	G	G						T	T	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		139		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		Y	.	A	V	M	I	E	P	F	T	I	A	A	N	V	T	G	H	G	Q	P	T	E	N	D	T	V	L	V	Y	G	A	G	P	I	G	L	T	I	V	Q	V	L	K	G	V	Y	N	V	K	N	V	I	V	A	D	R	I	D	E	R	L	E	K	A	K	E	S	G	A	D	W	A	I	N	N	S	Q	T	P
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		K	V	C	L	L	G	C	G	I	S	T	G	Y	G	A	A	V	N	T	A	K	L	E	P	G	S	V	C	A	V	F	G	L	G	G	V	G	L	A	V	I	M	G	C	K	V	A	G	A	S	R	I	I	G	V	D	I	N	K	D	K	F	A	R	A	K	E	F	G	A	T	E	C	I	N	P	Q	D	F	S
Template Known Secondary structure				G	G	G	G	T											T	T	T				T	T									S													T	T		S							S		G	G	G								T		S					G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
					218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.
Predicted Secondary structure		.	.	.																																																							.	.															.	.	.	.
Query SS confidence		.	.	.																																																							.	.															.	.	.	.
Query Sequence		.	.	.	L	G	E	I	F	T	E	K	G	I	K	P	T	L	I	I	D	A	A	C	H	P	S	I	L	K	E	A	V	T	L	A	S	P	A	A	R	I	V	L	M	G	F	S	S	E	P	S	E	V	I	Q	Q	G	.	.	I	T	G	K	E	L	S	I	F	S	S	R	L	N	.	.	.	.	A	N	K
Query Conservation		.	.	.																																																							.	.															.	.	.	.
Alig confidence		.	.	.																																																							.	.															.	.	.	.
Template Conservation
Template Sequence		K	P	I	Q	E	V	L	I	E	M	T	D	G	G	V	D	Y	S	F	E	C	I	G	N	V	K	V	M	R	A	A	L	E	A	C	H	K	G	W	G	V	S	V	V	V	G	V	A	A	S	G	E	E	I	A	T	R	P	F	Q	L	V	T	G	R	T	W	K	G	T	A	F	G	G	W	K	S	V	E	S
Template Known Secondary structure		S											T	S		B	S						S												T	B		T	T	T							S				T	T							T					T	T							S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	I	V	I	D	W	L	S	K	G	L	I	K	P	E	K	L	I	T	H	T	F	D	F	Q	H	V	A	D	A	I	S	L	F	E	Q	D	Q	K	H	C	C	K	V	L	L	T	F
Query Conservation
Alig confidence																																										.	.
Template Conservation																																										.	.
Template Sequence		V	P	K	L	V	S	E	Y	M	S	K	K	I	K	V	D	E	F	V	T	H	N	L	S	F	D	E	I	N	K	A	F	E	L	M	H	S	G	K	S	.	.	I	R	T	V	V	K	I
Template Known Secondary structure											T	T	S	S			G	G	G							G	G	G										T	T			.	.	S
Template Predicted Secondary structure																																										.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.			.	.	.	370	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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