Job Description P38105 Confidence 100.00% Date Wed Jan 25 15:20:53 GMT 2012 Rank 29 Aligned Residues 335 % Identity 21% Template c1kolA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:formaldehyde dehydrogenase; PDBTitle: crystal structure of formaldehyde dehydrogenase Resolution 1.65 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.								.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.
Query Sequence		K	S	I	L	I	E	K	P	N	Q	L	A	I	V	E	R	E	I	P	T	.	.	.	.	.	.	.	P	S	A	G	E	V	R	V	K	V	K	L	A	G	I	C	G	S	D	S	H	I	Y	R	G	H	N	P	F	A	K	Y	P	R	V	I	G	H	E	F	F	G	V	I	D	A	V	G	E	G	V	E	S
Query Conservation																						.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.																															.
Template Conservation																																																											.
Template Sequence		R	G	V	V	Y	L	G	S	G	K	V	E	V	Q	K	I	D	Y	P	K	M	Q	D	P	R	G	K	K	I	E	H	G	V	I	L	K	V	V	S	T	N	I	C	G	S	D	Q	H	M	V	R	G	R	T	T	A	Q	.	V	G	L	V	L	G	H	E	I	T	G	E	V	I	E	K	G	R	D	V	E	N
Template Known Secondary structure									T	T												S	B		T	T	S		B		S	S																				T	T		S				.	T	T		B														T	T			S
Template Predicted Secondary structure																																																											.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.											.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.															.	.																.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.															.	.																.	.
Query Sequence		A	R	V	G	E	R	V	A	V	D	P	V	V	S	C	G	H	C	Y	P	C	S	I	G	K	P	N	V	C	T	T	L	A	V	L	G	V	.	.	.	.	.	.	.	.	.	.	H	A	D	G	G	F	S	E	Y	A	V	V	P	A	.	.	K	N	A	W	K	I	P	E	A	V	A	D	Q	Y	A	.	.
Query Conservation																																							.	.	.	.	.	.	.	.	.	.															.	.																.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.															.	.																.	.
Template Conservation
Template Sequence		L	Q	I	G	D	L	V	S	V	P	F	N	V	A	C	G	R	C	R	S	C	K	E	M	H	T	G	V	C	L	T	V	N	P	A	R	A	G	G	A	Y	G	Y	V	D	M	G	D	W	T	G	G	Q	A	E	Y	V	L	V	P	Y	A	D	F	N	L	L	K	L	P	D	R	D	K	A	M	E	K	I	R
Template Known Secondary structure				T	T							S					S	S	S					T	T		G	G	G		S	S	S		S	S	S	S				B	T		T	T	S			B				S	B	S					S	S									S								T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
				141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	V	M	I	E	P	F	T	I	A	A	N	V	T	G	H	G	Q	P	T	E	N	D	T	V	L	V	Y	G	A	G	P	I	G	L	T	I	V	Q	V	L	K	G	V	Y	N	V	K	N	V	I	V	A	D	R	I	D	E	R	L	E	K	A	K	E	S	G	A	D	W	A	I	N	N	S	Q	T	P	L
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		D	L	T	C	L	S	D	I	L	P	T	G	Y	H	G	A	V	T	A	G	V	G	P	G	S	T	V	Y	V	A	G	A	G	P	V	G	L	A	A	A	A	S	A	R	L	L	G	A	A	V	V	I	V	G	D	L	N	P	A	R	L	A	H	A	K	A	Q	G	F	E	I	A	D	L	S	L	D	T	P	L
Template Known Secondary structure				G	G	G	G	T												T	T			T	T									S													T	T		S							S											T	T						T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		219	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.																.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.														.	.
Predicted Secondary structure								.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	E	I	F	T	E	.	.	K	G	I	K	P	T	L	I	I	D	A	A	C	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	I	L	K	E	A	V	T	L	A	S	P	A	A	R	I	V	L	M	G	F	S	S	E	P	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I
Query Conservation								.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	E	Q	I	A	A	L	L	G	E	P	E	V	D	C	A	V	D	A	V	G	F	E	A	R	G	H	G	H	E	G	A	K	H	E	A	P	A	T	V	L	N	S	L	M	Q	V	T	R	V	A	G	K	I	G	I	P	G	L	Y	V	T	E	D	P	G	A	V	D	A	A	A	K	I	G	S	L	S	I	R
Template Known Secondary structure										S	S	S											T	T		B		S	S	T	T	G	G	G	S	B		T	T																				S				S			T	T		S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																							.
Query SS confidence																			.																							.
Query Sequence		Q	Q	G	I	T	G	K	E	L	S	I	F	S	S	R	L	N	.	A	N	K	F	P	I	V	I	D	W	L	S	K	G	L	I	K	P	E	K	L	I	.	T	H	T	F	D	F	Q	H	V	A	D	A	I	S	L	F	E	Q	D	Q	K	H	C	C	K	V	L	L	T	F	S	E
Query Conservation																			.																							.
Alig confidence																			.																							.																						.	.
Template Conservation																																																																.	.
Template Sequence		F	G	L	G	W	A	K	S	H	S	F	H	T	G	Q	T	P	V	M	K	Y	N	R	A	L	M	Q	A	I	M	W	D	R	I	N	I	A	E	V	V	G	V	Q	V	I	S	L	D	D	A	P	R	G	Y	G	E	F	D	A	G	V	P	.	.	K	K	F	V	I	D	P	H	K
Template Known Secondary structure								T	T						S	S																T	T	S								T						G	G	G											T		S	.	.							T	T
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.			.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions