 |
Job Description | P23538 | Confidence | 99.81% | Date | Thu Jan 5 11:39:36 GMT 2012 |
Rank | 21 | Aligned Residues | 107 |
% Identity | 29% | Template | c3t07D_ |
PDB info |
PDB header:transferase/transferase inhibitor | Chain: D: PDB Molecule:pyruvate kinase; |
PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid
|
Resolution | 3.30 Å |
|
 |
  |   |
356 | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | |
. | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | K | I | I | A | E | G | R | A | I | G | H | R | I | G | A | G | P | V | K | V | I | H | D | I | S | E | M | N | R | I | . |
E | P | G | D | V | L | V | T | D | M | T | D | P | D | W | E | P | I | M | K | K | A | S | A | I | V | T | N | R | G | G | R | T | C | H | A | A | I | I | A | R | E | L | G | I | P | A | V |
Query Conservation |   |
  |   |   |
|   |   |
|   |   |
|
|   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |
|
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |   |
|
|   |
|
|
|   |
|
|   |
|
|   |   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|   |   |
|   |
|
|   |   |
|
|
|   |
|   |   |
|
|
|   |
|
Template Sequence |   |
G | D | E | I | A | N | G | Q | G | I | G | R | G | S | V | V | G | T | T | L | V | A | E | T | V | K | D | L | E | G | K | D | L | S | D | K | V | I | V | T | N | S | I | D | E | T | F | V | P | Y | V | E | K | A | L | G | L | I | T | E | E | N | G | I | T | S | P | S | A | I | V | G | L | E | K | G | I | P | T | V |
Template Known Secondary structure |   |
|
|
| S |  |  |
|  |  |  | S | S |
|  |  |  |  |  |  |  |  |
| S | S | T | T | T | T | S | S | S |
|
| S | S |  |  |  |  |  | S |
|
|
| T | T | T |  |  |  |  | T | T | S | S |  |  |  |  | S | S |
|
| T | T | S |  |  |  |  |  |  |  |  |  | T |
|
|  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
473 | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . |
  |
  |   |
435 | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | G | C | G | D | A | T | E | R | M | K | D | G | E | N | V | T | V | S | C | A | E | G | D | T | G | Y | V | Y | A | E |
Query Conservation |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|
| . | . | . |
|   |   |   |
|   |
|
|   |
|
Template Sequence |   |
V | G | V | E | K | A | V | K | N | I | S | N | N | V | L | V | T | I | . |
. |
. |
D | A | A | Q | G | K | I | F | E | G |
Template Known Secondary structure |   |
 |
|
| T | T |  |  |  |  | S |
| S | S |
|  |  |  |  | . | . | . |  | T | T | T | T |  |  |  | S | S |
Template Predicted Secondary structure |   |
 |  |
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  | . | . | . |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
553 | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | |
|
|
. | . | . | . | . | . | . | . | . | 580 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|