Job Description P23538 Confidence 58.87% Date Thu Jan 5 11:39:36 GMT 2012 Rank 84 Aligned Residues 192 % Identity 15% Template c3i12A_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: the crystal structure of the d-alanyl-alanine synthetase a from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	N	D	V	D	R	V	G	G	K	N	A	S	L	G	E	M	I	T	N	L	S	G	M	G	V	S	V	P	N	G	F	A	T	T	A	D	A	F	N	Q	F	L	D	Q	S	G	V	N	Q	R	I	Y	E	L	L	D	K	T	D	I	D	D	V	T	Q	L	A	K	A	G	A	Q	I	R	Q	W	I	I
Query Conservation
Alig confidence													.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	L	S	S	A	A	C	M	D	K	.	.	.	.	D	V	A	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													.	.	.	.										T	T			B								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	P	F	Q	P	E	L	E	N	A	I	R	E	A	Y	A	Q	L	S	A	D	D	E	N	A	S	F	A	V	R	S	S	A	T	A	E	D	M	P	D	A	S	F	A	G	Q	Q	E	T	F	L	N	V	Q	G	F	D	A	V	L	V	A	V	K	H	V	F	A	S	L	F	N	D	R	A	I	S	Y	R
Query Conservation
Alig confidence		.	.	.																			.	.	.	.	.					.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																			.	.	.	.	.					.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	R	T	N	R	H	A	F	S	F	A	E	V	E	S	R	L	G	L	.	.	.	.	.	P	L	F	V	.	.	.	.	.	.	.	.	.	.	K	P	A	N	Q	G	S	S	V	G	V	S	K	V	A	N	E	A	Q	Y	Q	Q	A	V	A	L	A	F	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	T	T	T	G	G	G												S	.	.	.	.	.	S				.	.	.	.	.	.	.	.	.	.			T	T			T	T	T	T					S	S													.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																			.	.	.	.	.					.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.											.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	Q	G	Y	D	H	R	G	V	A	L	S	A	G	V	Q	R	M	V	R	S	D	L	A	S	S	G	V	M	F	S	I	D	T	E	S	G	F	D	Q	V	V	F	I	T	S	A	W	G	L	G	E	M	V	V	Q	G	A	V	N	P	D	E	F	Y	V	H	K	P	T	L	A	A	N	R	P	A	I	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																														.	.	.	.																															.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																														.	.	.	.																															.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	E	F	D	H	K	V	V	V	E	Q	G	I	K	G	R	E	I	E	C	A	V	L	G	N	D	N	P	Q	A	.	.	.	.	S	T	C	G	E	I	V	L	N	S	E	F	Y	D	T	K	Y	I	D	D	N	G	A	Q	V	V	V	P	A	Q	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.				S										S										S	S	S				.	.	.	.										T	T			T	T	T	T	S	G	G	G	G					S	S		S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																														.	.	.	.																															.	.	.	.	.	.	.	.	.
Template SS confidence
										213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		R	R	T	M	G	S	K	K	I	R	M	V	Y	A	P	T	Q	E	H	G	K	Q	V	K	I	E	D	V	P	Q	E	Q	R	D	I	F	S	L	T	N	E	E	V	Q	E	L	A	K	Q	A	V	Q	I	E	K	H	Y	G	R	.	.	P	M	D	I	E	W	A	K	D	G	H	T	G	K	L	F	I	V	Q
Query Conservation																																																													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.										.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	S	E	V	N	D	K	I	R	A	I	A	I	Q	A	Y	Q	T	L	G	C	A	G	M	A	R	V	D	V	F	L	T	.	A	D	N	E	V	V	I	N	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																			T	T													.	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
																																							274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	P	E	T	V	R	S	R	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	T	L	P	G	F	T	N	I	S
Template Known Secondary structure				S	S				S	T	T
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions