Job Description P23538 Confidence 46.99% Date Thu Jan 5 11:39:36 GMT 2012 Rank 98 Aligned Residues 188 % Identity 16% Template c2i80B_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies Resolution 2.19 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	N	D	V	D	R	V	G	G	K	N	A	S	L	G	E	M	I	T	N	L	S	G	M	G	V	S	V	P	N	G	F	A	T	T	A	D	A	F	N	Q	F	L	D	Q	S	G	V	N	Q	R	I	Y	E	L	L	D	K	T	D	I	D	D	V	T	Q	L	A	K	A	G	A	Q	I	R	Q	W	I	I
Query Conservation
Alig confidence													.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	L	S	A	A	S	S	M	D	K	.	.	.	.	L	V	M	K	Q	L	F	E	H	R	G	L	P	Q	L	P	Y	I	S	F	L	R	S	E	Y	E	K	Y	E	H	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													.	.	.	.											T																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	P	F	Q	P	E	L	E	N	A	I	R	E	A	Y	A	Q	L	S	A	D	D	E	N	A	S	F	A	V	R	S	S	A	T	A	E	D	M	P	D	A	S	F	A	G	Q	Q	E	T	F	L	N	V	Q	G	F	D	A	V	L	V	A	V	K	H	V	F	A	S	L	F	N	D	R	A	I	S	Y	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.					.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.					.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	L	K	L	V	N	D	K	L	N	Y	.	.	.	.	.	P	V	F	V	.	.	.	.	.	.	.	.	.	.	K	P	A	N	L	G	S	S	V	G	I	S	K	C	N	N	E	A	E	L	K	E	G	I	K	E	A	F	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.										S	.	.	.	.	.	S				.	.	.	.	.	.	.	.	.	.			T	T		S	S		T	T					S	S													.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.					.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													163	.	.	.	.	.	.	170	.	.						.	.	.	.											.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	Q	G	Y	D	H	R	G	V	A	L	S	A	G	V	Q	R	M	V	R	S	D	L	A	S	S	G	V	M	F	S	I	D	T	E	S	G	F	D	Q	V	V	F	I	T	S	A	W	G	L	G	E	M	V	V	Q	G	A	V	N	P	D	E	F	Y	V	H	K	P	T	L	A	A	N	R	P	A	I	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	Q	F	D	R	K	L	V	I	E	Q	G	V	N	A	R	E	I	E	V	A	V	L	G	N	D	Y	P	E	.	.	.	.	.	.	.	.	.	.	.	A	T	W	P	G	E	V	V	K	D	V	A	F	V	Q	L	Q	I	P	A	D	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	T		S																				S	S	S			.	.	.	.	.	.	.	.	.	.	.										S	S							S	S		S	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.												.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		R	R	T	M	G	S	K	K	I	R	M	V	Y	A	P	T	Q	E	H	G	K	Q	V	K	I	E	D	V	P	Q	E	Q	R	D	I	F	S	L	T	N	E	E	V	Q	E	L	A	K	Q	A	V	Q	I	E	K	H	Y	G	R	.	.	P	M	D	I	E	W	A	K	D	G	H	T	G	K	L	F	I	V	Q
Query Conservation																																																													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.										.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	E	D	V	Q	L	T	L	R	N	M	A	L	E	A	F	K	A	T	D	C	S	G	L	V	R	A	D	F	F	V	T	.	E	D	N	Q	I	Y	I	N	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	T													.	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
																																							265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	P	E	T	V	R	S	R	G	Q	V	M	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	N	A	M	P	G	F	T	A	F	S	M	Y	P
Template Known Secondary structure				S	S				S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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