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Job DescriptionP23538
Confidence100.00%DateThu Jan 5 11:39:36 GMT 2012
Rank4Aligned Residues700
% Identity27%Templatec1vbhA_
PDB info PDB header:transferaseChain: A: PDB Molecule:pyruvate,orthophosphate dikinase; PDBTitle: pyruvate phosphate dikinase with bound mg-pep from maize
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.... .....20.........30.........40.........50.........60.... .....70.......
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Query Sequence  SPLVLWYN. . . . QLGMNDVDRVGGKNASLGEMITNLSGMGVSVPNGFATTADAFNQFLDQSG. . . . . VNQRIYELLDKTD
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Template Sequence  KKRVFHFGKGKSEGNKTMKELLGGKGANLAEM. . . . ASIGLSVPPGFTVSTEACQQYQDAGCALPAGLWAEIVDGLQWVE
Template Known Secondary structure 

STTSS
TT
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SSSS

TT
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   3......10.........20.........30.... .....40.........50.........60.........70........
 
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Query Sequence  IDDVTQLAKAGAQIR. . . . . . . . . . . QWIIDTPFQPELENAIREAYAQLSAD. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EYMGATLGDPQRPLLLSVRSGAAVSMPGMMDTVLNLGLNDEVAAGLAAKSGERFAYDSFRRFLDMFGNVVMDIPRSLFEE
Template Known Secondary structure  T
BTT
SSSB




SS

TT



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TS


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   7980.........90.........100.........110.........120.........130.........140.........150........
 
   119120.........130.........140.... .....150.. .......160.........170.........180.....
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Query Sequence  . . . . . DENASFAVRSSATAEDMPDASFAGQQ. ETFLNVQG. . . . . . . FDAVLVAVKHVFASLFNDRAISYRVHQGYDHRG
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Template Sequence  KLEHMKESKGLKNDTDLTASDLK. . ELVGQYKEVYLSAKGEPFPSDPKKQLELAVLAVFNSWESPRAKKYRSINQIT. GL
Template Known Secondary structure  S
SSTT


..SS



STT
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   159160.........170.........180. ........190.........200.........210.........220.........230... ..
 
   186...190.........200 .........210.........220.........230.........240.........250.........260..
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Query Sequence  VALSAGVQRMVRSDL. . . ASSGVMFSIDTESGFDQVVFITSAWGLGEMVVQGAVNPDEFYVHKPTLAANRPAIVRRTMGS
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Template Sequence  RGTAVNVQCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 






S
SSTT
SS
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   236...240.........250.........260.........270.........
 
   263......270.........280.........290.........300.........310.........320.........330........
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Query Sequence  KKIRMVYAPTQEHGKQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQARPE. . . .
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Template Sequence  . . . . . . . . . . . . . . . . . . . . RTPEDLDAMKNLMPQAYDELVENCNILESHYKEMQDIEFTV. . QENRLWMLQCRTGKRTG
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TTT

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   289290.........300.........310.........320......... 330.........340......
 
   339340.........350.........360.........370....... ..380.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . TVRSRGQVMERYTLHSQGKIIAEGRAIGHRIGAGPVKVI. HDISEMNRIEPG
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Template Sequence  KSAVKIAVDMVNEGLVEPRSAIKMVEPGHLDQLLHPQFENPSAYKDQVIATGLPASPGAAVGQVVFTAEDAEAWHSQGKA
Template Known Secondary structure  TTSS
GGGS
TTS

BS
TTTTGGG



STT

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   347..350.........360.........370.........380.........390.........400.........410.........420......
 
   390.........400.........410.........420.........430......... 440.........450.......
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Query Sequence  DVLVTDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGD. . . . . . . . . . . . ATERMKDGENVTVSCAEG
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Template Sequence  AILVRAETSPEDVGGMHAAVGILTE. . . MTSHAAVVARGWGKCCVSGCSGIRVNDAEKLVTIGGHVLREGEWLSL. . . NG
Template Known Secondary structure  SS

TTTSS
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STTTTTTTT
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   427..430.........440.........450. ........460.........470.........480.........490........ .500
 
   458.460.........470.... .....480.........490.........500.........510.........520.........530
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Query Sequence  DTGYVYAELLEFSVKSS. . . . . . . SVETMPDLPLKVMMNVGNPDRAFDFACLPNEGVGLARLEFIINRMIGVHPRALLEF
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Template Sequence  STGEVILGKQPLSPPALSGDLGTFMAWVDDVRKLKVLANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRQMI
Template Known Secondary structure  TT
BS


B




S


S

STT

SGGGGTTT
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   504.....510.........520.........530.........540.........550.........560.........570.........580...
 
   531........540.........550.........560.........570.........580.........590.....
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Query Sequence  DDQEPQLQNEIREMMKGFDSPREFYVGRLTEGIATLGAAFYPKRVIVRLSDFKSNEYANLVGGER. . . . . . . . . . . . . . .
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Template Sequence  MAPTLELRQQALDR. . . . . . . . . . LLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGNIEDIVSELCAETGANQED
Template Known Secondary structure 
SS..........TTTS


S
GGGGS

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   584.....590....... ..600.........610.........620.........630.........640.........650...
 
   596...600.........610.........620.........630....... ..640.........650.........660......
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Query Sequence  . . . . . YEPDEENPMLGFRGAGRYVSDSFRDCFALECEAVKRVRNDMG. . . . LTNVEIMIPFVRTVDQAKAVVEELARQGL
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Template Sequence  ALARIEKLSEVNPMLGFRGCRLGI. . SYPELTEMQARAIFEAAIAMTNQGVQVFPEIMVPLVGTPQELGHQVTLIRQVAE
Template Known Secondary structure 

S
GGGSS
T..
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S
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   654.....660.........670....... ..680.........690.........700.........710.........720.........730.
 
   667..670. ........680.........690.........700.........710...... ...720........
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Query Sequence  KRGEN. . . . . GLKIIMMCEIPSNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDS. . . . . . GVVSELFDERND. . . . . . .
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Template Sequence  KVFANVGKTIGYKVGTMIEIPRAALVADEIAEQAEFFSFGTNDLTQMTFGYSRDDVGKFIPVYLAQGILQHDPFEVLDQR
Template Known Secondary structure  TT





STTTT
S
T

TTTTTS
SS
TTTS

TT
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   732.......740.........750.........760.........770.........780.........790.........800.........810.
 
   729730.........740.... .....750.........760.........770.........780.........790
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Query Sequence  AVKALLSMAIRAAKKQ. . GKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAEL
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Template Sequence  GVGELVKFATERGRKARPNLKVGICGEHGGE. PSSVAFFAKAGLDYVSCSPFRVPIARLAAAQV
Template Known Secondary structure  TSTT

SGGGG
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   812.......820.........830.........840.. .......850.........860.........870....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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