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Job DescriptionP23538
Confidence100.00%DateThu Jan 5 11:39:36 GMT 2012
Rank3Aligned Residues714
% Identity26%Templatec1kblA_
PDB info PDB header:transferaseChain: A: PDB Molecule:pyruvate phosphate dikinase; PDBTitle: pyruvate phosphate dikinase
Resolution1.94 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60... ......70.........80.
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Query Sequence  SPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVSVPNGFATTADAFNQFLDQS. . . . . GVNQRIYELLDKTDIDDV
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Template Sequence  AKWVYKFEEGNASMRNLLGGKGCNLAEM. . . . TILGMPIPQGFTVTTEACTEYYNSGKQITQEIQDQIFEAITWLEELNG
Template Known Secondary structure 


GGG

GGG....TT





TTSS


T
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   2.......10.........20......... 30.........40.........50.........60.........70.......
 
   82... ....90... ......100.........110.........120..
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Query Sequence  TQLA. . . . . . . . . . KAGAQIRQ. WIIDTPFQPELENAIREAYAQLSADDENA. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KKFGDTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIID
Template Known Secondary structure  S
BT
SSS
B

SS

TTSS
T

TTT
S


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   78.80.........90.........100.........110.........120.........130.........140.........150.......
 
   123......130......... 140.........150.. .......160.........170.........180.........
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Query Sequence  . . . . . . SFAVRSSATAEDMPDAS. . FAGQQETFLNVQG. . . . . FDAVLVAVKHVFASLFNDRAISYRVHQGYDHRGVALS
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Template Sequence  AMKEEKGVHFDTDLTADDLKELAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPG. DWGTA
Template Known Secondary structure  T


SGGG

TTTTT





TTSTT

G.GG

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   158.160.........170.........180.........190.........200.........210.........220.........230. .....
 
   190.........200 .........210.........220.........230.........240.........250.........260......
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Query Sequence  AGVQRMVRSDL. . . ASSGVMFSIDTESGFDQVVFITSAWGLGEMVVQGAVNPDEFYVHKPTLAANRPAIVRRTMGSKKIR
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Template Sequence  VNVQTMVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLEN. . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 


TTSSTT

TTT

S

TSS

GGG....................
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   237..240.........250.........260.........270.........280.........290......
 
   267..270.........280.........290.........300.........310.........320.........330........
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Query Sequence  MVYAPTQEHGKQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQARPE. . . . . . . .
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . DMPDCYKQFMDLAMKLEKHFRDMQDMEFTIE. . EGKLYFLQTRNGKRTAPAAL
Template Known Secondary structure  ...........................
TS
..TT



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   297..300.........310.........320....... ..330.........340.......
 
   339340.........350.........360.........370......... 380.........390...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . TVRSRGQVMERYTLHSQGKIIAEGRAIGHRIGAGPVKVIHD. ISEMNRIEPGDVLV
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Template Sequence  QIACDLVDEGMITEEEAVVRIEAKSLDQLLHPTFNPAALKAGEVIGSALPASPGAAAGKVYFTADEAKAAHEKGERVILV
Template Known Secondary structure  TTSS
S
GGGGGGGGS

S


SSSTT

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   348.350.........360.........370.........380.........390.........400.........410.........420.......
 
   394.....400.........410.........420.........430......... 440.........450.........460.
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Query Sequence  TDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGD. . . . . . . . . . . . ATERMKDGENVTVSCAEGDTGY
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Template Sequence  RLETSPEDIEGMHAAEGILTVRGGMTSHAAVVARGMGTCCVSGCGEIKINEEAKTFELGGHTFAEGDYISL. . . DGSTGK
Template Known Secondary structure  SS

GGG
SSS

TTST


TT
TTTTTTTT
...TTT
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   428.430.........440.........450.........460.........470.........480.........490........ .500....
 
   462.......470 .........480.........490.........500.........510.........520.........530....
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Query Sequence  VYAELLEFS. . . . . . . VKSSSVETMPDLPLKVMMNVGNPDRAFDFACLPNEGVGLARLEFIINRMIGVHPRALLEFDDQE
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Template Sequence  IYKGDIETQEASVSGSFERIMVWADKFRTLKVRTNADTPEDTLNAVKLGAEGIGLCRTEHMFFEADRIMKIRKMILSDSV
Template Known Secondary structure  S









S

STT

S

TS

S
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   505....510.........520.........530.........540.........550.........560.........570.........580....
 
   535....540.........550.........560.........570.........580.........590.... ..
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Query Sequence  PQLQNEIREMMKGFDSPREFYVGRLTEGIATLGAAFYPKRVIVRLSDFKSNEYANLVGGE. . . . . . . . . . . . . . . . . . RY
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Template Sequence  EAREEALN. . . . . . . . . . . ELIPFQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQAELAKNMGLTLAEVKAKVD
Template Known Secondary structure  ...........TTTT




S
GGGGS

ST

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   585....590.. .......600.........610.........620.........630.........640.........650...
 
   597..600.........610.........620.........630.... .....640 .........650.........660.........670.
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Query Sequence  EPDEENPMLGFRGAGRYVSDSFRDCFALECEAVKRVRN. . . . DMGLTN. VEIMIPFVRTVDQAKAVVEELARQGLKRGEN
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Template Sequence  ELHEFNPMMGHRGCRLAV. . TYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKELKFVKDVVVEVAEQVKKE
Template Known Secondary structure 

S
GGGSS
T..







S

S
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   654.....660.........670. ........680.........690.........700.........710.........720.........730.
 
   672.......680.........690.........700.........710.........720. ........730...
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Query Sequence  . . . . . GLKIIMMCEIPSNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVSE. . . . . . . . . . . . . LFDERNDAVKAL
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Template Sequence  KGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKFLDSYYKAKIYESDPFARLDQTGVGQL
Template Known Secondary structure  T





STTTT
S
T

TTS
SS
TTTS

TTT
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   732.......740.........750.........760.........770.........780.........790.........800.........810.
 
   734.....740.. .......750.........760.........770.........780.........790.
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Query Sequence  LSMAIRAAK. . KQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAELK
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Template Sequence  VEMAVKKGRQTRPGLKCGICGEHGGD. PSSVEFCHKVGLNYVSCSPFRVPIARLAAAQAA
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TT

SGGGGS.TT
S
GGG
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   812.......820.........830....... ..840.........850.........860.........870
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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