Return to main results Retrieve Phyre Job Id

Job DescriptionP23538
Confidence100.00%DateThu Jan 5 11:39:36 GMT 2012
Rank2Aligned Residues739
% Identity24%Templatec1h6zA_
PDB info PDB header:transferaseChain: A: PDB Molecule:pyruvate phosphate dikinase; PDBTitle: 3.0 a resolution crystal structure of glycosomal pyruvate2 phosphate dikinase from trypanosoma brucei
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10... ......20.........30.........40.........50.........60.........70.....
Predicted Secondary structure 



....














.....
Query SS confidence 








. . . .





























































. . . . .
Query Sequence  GSSPLVLWY. . . . NQLGMNDVDRVGGKNASLGEMITNLSGMGVSVPNGFATTADAFNQFLDQSGVNQRIYELLDK. . . . .
Query Conservation       

 
.... 

   
   








 
   
   
 


 





 

  

    
   
      .....
Alig confidence 








....




















....




































.....
Template Conservation          
     
       











....   
 









 

  

    
   
   
      
Template Sequence  VAKKWVYYFGGGNADGNKNMKELLGGKGANLAEM. . . . VNLGIPVPPGFTITTEACKTYQETETIPQEVADQVRENVSRV
Template Known Secondary structure 





SSS
S

TT
....TT





TTTTTSS


Template Predicted Secondary structure 













....












Template SS confidence 















































































   1........10.........20.........30.... .....40.........50.........60.........70......
 
   76...80.........90.........100.........110..... ....120
Predicted Secondary structure  .........








..........................



Query SS confidence  . . . . . . . . .







































. . . . . . . . . . . . . . . . . . . . . . . . . .




Query Sequence  . . . . . . . . . TDIDDVTQLAKAGAQIRQWIIDTPFQPELENAIREAYAQL. . . . . . . . . . . . . . . . . . . . . . . . . . SADDE
Query Conservation  .........        
      

  
    

  
   
  

  
..........................     
Alig confidence  .........







































..........................




Template Conservation 
            

  



 
   
 


  
       
            


 

                    
Template Sequence  EKEMGAKFGDPANPLLFSVRSGAAASDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEEAL
Template Known Secondary structure 

BTT
TTSB

S
TT




SBS

GGG
GGG


STTTSTTT
Template Predicted Secondary structure 














Template SS confidence 















































































   77..80.........90.........100.........110.........120.........130.........140.........150......
 
   121........130.........140.........150 .........160.........170.........180.........
Predicted Secondary structure 























...........










Query SS confidence 





























. . . . . . . . . . .






































Query Sequence  NASFAVRSSATAEDMPDASFAGQQETFLNV. . . . . . . . . . . QGFDAVLVAVKHVFASLFNDRAISYRVHQGYDHRGVALS
Query Conservation      





  

    



   
 
 
...........   
 
  


 



 

 

  

   

      

Alig confidence 





























...........
































.




Template Conservation      





  

    




  
 
 
     
   


  
 
  


 
 

  
 


 

   

  .   

Template Sequence  SRMKERRGTKFDTDLTASDLKELCDGYLELFELKTGCSFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITG. LLGTA
Template Known Secondary structure  S
S
GGG

TTSSS




TTT
TTTTTS


S.




Template Predicted Secondary structure 



























.



Template SS confidence 















































































   162.......170.........180.........190.........200.........210.........220.........230..... ....240
 
   190........ .200.........210.........220.........230.........240.........250.........260......
Predicted Secondary structure 



...









































Query SS confidence 








. . .



































































Query Sequence  AGVQRMVRS. . . DLASSGVMFSIDTESGFDQVVFITSAWGLGEMVVQGAVNPDEFYVHKPTLAANRPAIVRRTMGSKKIR
Query Conservation 



 

  ...    


 

 

 

      
 
  



 

 
   

   
           
       
   
Alig confidence 








...































































....
Template Conservation 



 

 
    
 



 

 

 

      
 
  



 



   

   
 
                 ....
Template Sequence  VNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIRTPQQINHSLSLRWAKAHGVGEEERRK. . . .
Template Known Secondary structure 


S
SSTT
SS
SSS

SS
S

TT

S

SSTTSS

....
Template Predicted Secondary structure 














































....
Template SS confidence 















































































   241........250.........260.........270.........280.........290.........300.........310......
 
   267..270.........280.........290.........300.........310.........320.........330........
Predicted Secondary structure 



























........
Query SS confidence 







































































. . . . . . . .
Query Sequence  MVYAPTQEHGKQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQARPE. . . . . . . .
Query Conservation                      
      
    
  

 
   

  

 






 

    
 


 


........
Alig confidence  ....................





































..











........
Template Conservation  ....................       
       

  
  

  

 






 
.. 
 
 





         
Template Sequence  . . . . . . . . . . . . . . . . . . . . RYPSMEEAMPENYRLLCDVRKRLENHYRDMQDLEFTVQ. . DGRLWLLQCRNGKRTIHAAV
Template Known Secondary structure  ....................S

STS
..TT



Template Predicted Secondary structure  ....................










..









Template SS confidence 















































































   317..320.........330.........340.........350.... .....360.........370....
 
   339340.........350.........360.........370...... ...380.........390...
Predicted Secondary structure  ........................





























.






Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . .





































.
















Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . TVRSRGQVMERYTLHSQGKIIAEGRAIGHRIGAGPVKV. IHDISEMNRIEPGDVLV
Query Conservation  ........................
                   
  
  

 
   
 
  .              


Alig confidence  ........................





































.
















Template Conservation    
 
    
      
     
                     
  
  



 
 
 
                 


Template Sequence  RIAIDMVNEGLISREEAVLRIDPYQVDHLMHPNLEPGAEKANKPIGRGLAASPGAAVGQVVFDAESAKEWSGRGKKVIMV
Template Known Secondary structure  TSS
TS
GGGGGGGG




TTTTS





S
SSSTTTTS

Template Predicted Secondary structure 
















































Template SS confidence 















































































   375....380.........390.........400.........410.........420.........430.........440.........450....
 
   394.....400.........410.........420.........430.........440... ......450.........460...
Predicted Secondary structure 

















..........









Query SS confidence 

















































. . . . . . . . . .



















Query Sequence  TDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATER. . . . . . . . . . MKDGENVTVSCAEGDTGYVY
Query Conservation       
          



  

 


 

 

  


 


       ..........   
  
 

   
      
Alig confidence 

















































..........








...







Template Conservation       
          



  

 


 




 



 


                 
  
  
 
...

  
 
 
Template Sequence  RLETSPEDLAGMDAACGILTARGGMTSHAAVVARGMGKCCVSGCGDMVIRGKSFKLNGSVFREGDYITI. . . DGSKGLIY
Template Known Secondary structure  SS

GGG
TTTTTSSSS

TT
TT



TT
SSS
TTSS
...TTSS
Template Predicted Secondary structure 







































...



Template SS confidence 















































































   455....460.........470.........480.........490.........500.........510.........520... ......530.
 
   464.....470.... .....480.........490.........500.........510.........520.........530......
Predicted Secondary structure 
.......



























Query SS confidence 










. . . . . . .





























































Query Sequence  AELLEFSVKSS. . . . . . . SVETMPDLPLKVMMNVGNPDRAFDFACLPNEGVGLARLEFIINRMIGVHPRALLEFDDQEPQ
Query Conservation             .......           
  
             
  



 


                       
Alig confidence 










.......





























































Template Conservation                         
     
 


    
       






 


 
 
     
   
         
Template Sequence  AGKLKLRSPDLKGSFQTILQWCQEMKRLGVRTNADTPADAAKARSFGAEGVGLCRTEHMFFEGSRINFIREMILADSASG
Template Known Secondary structure 







S
STT

S
SSTTT

S
B
SGGGSTTTS
SS
Template Predicted Secondary structure 




























Template SS confidence 















































































   532.......540.........550.........560.........570.........580.........590.........600.........610.
 
   537..540.........550.........560.........570.........580.........590....... .
Predicted Secondary structure 























..................
Query SS confidence 




























































. . . . . . . . . . . . . . . . . .
Query Sequence  LQNEIREMMKGFDSPREFYVGRLTEGIATLGAAFYPKRVIVRLSDFKSNEYANLVGGERYE. . . . . . . . . . . . . . . . . . P
Query Conservation                               

      

 

  
   

           .................. 
Alig confidence 







...........









































..................
Template Conservation         
...........   
      
       

 




 
 

  
       
          
        
Template Sequence  RKAALDKL. . . . . . . . . . . LPIQRADFVGILRAMRGLPVTIRLLDPPLHEFVPHDAAAQFELAQKLGMPAEKVRNRVNAL
Template Known Secondary structure  ...........TTTSSS



S
GGGG

SS
SSTTTTS
SSS

SS
Template Predicted Secondary structure  ...........





























Template SS confidence 















































































   612....... 620.........630.........640.........650.........660.........670.........680
 
   599600.........610.........620.........630..... ....640.........650.........660.........670.
Predicted Secondary structure 











....













...
Query SS confidence 




































. . . .



































. . .
Query Sequence  DEENPMLGFRGAGRYVSDSFRDCFALECEAVKRVRND. . . . MGLTNVEIMIPFVRTVDQAKAVVEELARQGLKRGEN. . .
Query Conservation   
 

 

 

 
  
      

  

 

 

   ....     
 

 


    
                  ...
Alig confidence 















..


















....



































...
Template Conservation   
 

 

 



  
..  
 
   







            
 

 


    
    
                
Template Sequence  HELNPMLGHRGCRLGI. . TYPEIYNMQVRAIIEAAIAVSEEGSSVIPEIMVPLVGKKEELSLIREEVVKTAEAVITKSGK
Template Known Secondary structure 

SSSTTSS
..STTTTT







SS
S
Template Predicted Secondary structure 








..















Template SS confidence 















































































   681........690...... ...700.........710.........720.........730.........740.........750........
 
   672.......680.........690.........700.........710....... ..720...... ...730......
Predicted Secondary structure  ..










.



............
Query SS confidence  . .













































.








. . . . . . . . . . . .









Query Sequence  . . GLKIIMMCEIPSNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSG. VVSELFDER. . . . . . . . . . . . NDAVKALLSM
Query Conservation  ..   

 








         

 








  

 

   . 
       ............ 



 

  
Alig confidence  ..













































.








............









Template Conservation       

 








     
   

 









 

 

 
       
         
      



 

  
Template Sequence  RVHYTVGTMIEVPRAAVTADSIAQKADFFSFGTNDLTQMGCGFSRDDAGPFLRHYGNLGIYAQDPFQSIDQEGIGELVRI
Template Known Secondary structure 




STTTT
S
TTT

GGG
TTTTTT
SSSS
TTTS

TTT
Template Predicted Secondary structure 
























Template SS confidence 















































































   759760.........770.........780.........790.........800.........810.........820.........830........
 
   737..740..... ....750.........760.........770.........780.........790.
Predicted Secondary structure 

..













Query SS confidence 








. .













































Query Sequence  AIRAAKKQG. . KYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAELK
Query Conservation   
  
    ..  
 



     
     
  


   
  
  
   
  
    
Alig confidence 








..











.
































Template Conservation   
  
      
 





 
 
.
  
  

 


   

 
  

    
 
   
Template Sequence  AVTKGRRVKPMLKMGICGEHGGD. PATIGFCHKVGLDYVSCSPFRVPVAIVAAAHAS
Template Known Secondary structure  STT

SGGGG
.T
S
GGG
Template Predicted Secondary structure 










.




Template SS confidence 
























































   839840.........850.........860. ........870.........880.........890....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions