 |
Job Description | P32718 | Confidence | 95.69% | Date | Thu Jan 5 11:50:41 GMT 2012 |
Rank | 114 | Aligned Residues | 75 |
% Identity | 19% | Template | c3tsuA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:transcriptional regulatory protein; |
PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate
|
Resolution | 1.92 Å |
|
 |
  |   |
220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | S | L | L | E | N | A | A | R | A | I | A | T | S | I | N | L | F | D | P | D | A | V | I | L | G | G | G | V | M | D | M | P | A | F | P | R | E | T | L | V | A | M | T | Q | K | Y | L | R | R | P | L | P | H | Q | V | V | R | F | I | A | A | S | S | S | D | F | N | G | A | Q | G | A | A | I | L | A | H | Q | R |
Query Conservation |   |
  |   |   |   |   |   |
|
|   |   |
|   |   |
|   |   |   |
|   |
|   |   |
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
| . |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|   | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|   |   |
|   |   |
|
Template Sequence |   |
D | A | L | A | Q | G | F | A | A | L | M | R | E | Q | A | T | M | R | G | I | T | T | L | V | F | S | G | G | V | I | H | N | . |
R | L | L | R | A | R | L | A | H | Y | L | A | D | F | T | L | L | F | P | Q | S | L | P | A | . |
. |
. |
. |
. |
. |
. |
G | D | G | G | L | S | L | G | Q | G | V | I | A | A | A | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  | S | G | G | G | G |
| . |  |  |  |  |  |  |  |  |  |  | T | T | T | S |  |  |  |
|
|
| S | S |
| S | . | . | . | . | . | . | . | S | G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | |
. | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . |
  |
  |   |
300 | . | . |
Predicted Secondary structure |   |
 |  |  |
Query SS confidence |   |
|
|
|
Query Sequence |   |
F | L | P |
Query Conservation |   |
  |
|   |
Alig confidence |   |
|
|
|
Template Conservation |   |
  |   |   |
Template Sequence |   |
W | L | A |
Template Known Secondary structure |   |
 |  | T |
Template Predicted Secondary structure |   |
 |  |
|
Template SS confidence |   |
|
|
|
  |   |
742 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|