Job Description P32718 Confidence 80.83% Date Thu Jan 5 11:50:41 GMT 2012 Rank 152 Aligned Residues 266 % Identity 15% Template c3qbwA_ PDB info PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-2 actetylmuramic acid kinase (anmk) bound to adenosine diphosphate Resolution 2.23 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																						.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure												.	.													.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.													.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	G	V	D	M	G	A	T	H	.	.	I	R	F	C	L	R	T	A	E	G	E	T	.	.	L	H	C	E	K	K	R	T	A	E	V	I	A	P	G	L	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	G	E	M	I	D	E	Q	L	R	R	F	N	A
Query Conservation												.	.													.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.													.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	L	G	L	M	S	G	T	S	L	D	G	M	D	I	V	L	I	E	Q	G	D	R	T	T	L	L	A	S	H	Y	L	P	M	P	A	G	L	R	E	D	I	L	A	L	C	V	P	G	P	D	E	I	A	R	A	A	E	V	E	Q	R	W	V	A	L	A	A	Q	G	V	R	E	L	L	L	Q	Q	Q	M
Template Known Secondary structure									T	T		S										S	S	S																							S	S			T	T																											T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		63	.	.	.	.		.	.	70	.	.	.	.	.				.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.													.	.	.	.
Predicted Secondary structure							.									.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.									.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	C	H	G	L	.	V	M	G	F	P	A	L	V	.	.	.	S	K	D	K	R	T	I	I	S	T	P	N	L	P	L	T	A	A	D	L	Y	D	L	A	D	K	L	E	N	T	L	N	C	P	V	E	F	S	R	D	V	N	L	Q	L	S	W	.	.	.	.	.	.	.	.	.	.	.	.	D	V	V	E
Query Conservation							.									.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.									.	.	.													.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	P	D	E	V	R	A	I	G	S	H	G	Q	T	I	R	H	E	P	A	R	H	F	T	V	Q	I	G	N	.	.	.	.	.	.	.	.	.	.	.	P	A	L	L	A	E	L	T	G	I	D	V	V	A	D	F	R	R	R	D	V	A	A	G	G	Q	G	A	P	L	V	P	A	F	H	Q	A	L	F	S
Template Known Secondary structure			G	G	G															G	G	G	T								.	.	.	.	.	.	.	.	.	.	.									S	S													T	T							T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.												.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		N	R	L	T	Q	Q	L	V	L	A	A	Y	L	G	T	G	M	G	F	A	V	W	M	N	G	A	P	W	T	G	A	H	G	V	A	G	E	L	G	H	I	P	L	G	D	M	T	Q	H	C	A	C	G	N	P	G	C	L	E	T	N	C	S	G	M	A	L	R	.	R	W	Y	E	Q	Q	P	R	N	Y	P
Query Conservation																																																																						.
Alig confidence			.	.	.	.	.	.	.																																																													.
Template Conservation			.	.	.	.	.	.	.
Template Sequence		R	.	.	.	.	.	.	.	A	V	L	N	I	G	G	F	S	N	V	S	L	L	R	G	F	D	C	G	P	G	N	V	L	M	D	A	W	I	H	H	Q	R	G	E	H	F	D	R	D	G	A	W	A	A	S	G	Q	V	N	H	A	L	L	A	S	L	L	A	D	E	F	F	A	A	R	G	P	K	S	T
Template Known Secondary structure			.	.	.	.	.	.	.						S	S															S	S												S		S	S		G	G	G					T	S												T	S							S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.
Template SS confidence
		158								.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		206	.	.	.	210	.													.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	D	L	F	V	.	.	.	.	.	.	.	.	.	.	.	.	H	A	E	N	A	P	F	V	Q	S	L	L	E	N	A	A	R	A	I	A	T	S	I	N	L	F	D	P	D	A	V	I	L	G	G	G	V	M	D	M	P	A	F	P	R	E	T	L	V	A	M	T	Q	K	Y	L	R	R	P	L	P	H
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.																																						.	.																	.	.	.	.	.	.	.
Template Conservation																																																									.	.																	.	.	.	.	.	.	.
Template Sequence		G	R	E	R	F	N	L	P	W	L	Q	E	H	L	A	R	H	P	A	L	P	A	A	D	I	Q	A	T	L	L	E	L	S	A	R	S	I	S	E	S	L	L	D	A	Q	P	D	V	L	V	C	G	G	G	A	.	.	F	N	T	A	L	M	K	R	L	A	M	L	M	P	E	A	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	T	S	S									T	S	S																																			S	G	G	G	.	.	G													T	T	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.																	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.					.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence		Q	V	V	R	F	I	A	A	S	S	.	.	.	.	S	D	F	N	G	A	Q	G	A	A	I	L	A	H	Q	R	F	L	P	Q
Query Conservation												.	.	.	.
Alig confidence		.	.	.								.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	R	V	A	S	T	D	E	Y	G	I	P	P	A	W	M	E	G	M	A	F	A	W	L	A	H	R	F	L	E	R	L
Template Known Secondary structure		.	.	.					G	G	G	G	T	S		G	G	G															T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions