Job Description P32718 Confidence 94.87% Date Thu Jan 5 11:50:41 GMT 2012 Rank 116 Aligned Residues 278 % Identity 14% Template c3cqyA_ PDB info PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1 Resolution 2.30 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																						.	.	50	.	.	.	.	.	.
Predicted Secondary structure																	.	.											.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.											.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	H	N	V	V	A	G	V	D	M	G	A	T	H	.	.	I	R	F	C	L	R	T	A	E	G	.	.	.	E	T	L	H	C	E	K	K	R	T	A	E	V	I	A	P	G	L	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	G	E	M	I	D	E	Q
Query Conservation																	.	.											.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.											.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	N	K	A	Y	Y	I	G	L	X	S	G	T	S	X	D	G	V	D	A	V	L	V	D	F	A	G	E	Q	P	Q	L	I	G	T	H	T	E	T	I	P	T	H	L	L	K	G	L	Q	R	L	C	L	P	G	T	D	E	I	N	R	L	G	R	L	D	R	S	V	G	K	L	F	A	L	A	V	N	N	L
Template Known Secondary structure		T	T											T	T												S	S	S	S																					G	G	G		T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		57	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.											.	.	.
Predicted Secondary structure													.																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence													.																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	R	F	N	A	R	C	H	G	L	.	V	M	G	F	P	A	L	V	S	K	D	K	R	T	I	I	S	T	P	N	L	P	L	T	A	A	D	L	Y	D	L	A	D	K	L	E	N	T	L	N	C	P	V	E	F	S	R	D	V	N	L	Q	L	S	W	.	.	.	.	.	.	.	.	.	.	D	V	V
Query Conservation													.																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence													.									.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.
Template Sequence		L	A	K	T	K	I	A	K	D	E	I	I	A	I	G	S	H	G	Q	T	.	.	.	.	.	.	V	R	H	X	P	N	L	E	V	G	F	T	L	Q	I	G	D	P	N	T	I	A	T	E	T	G	I	D	V	I	A	D	F	R	R	K	D	I	A	L	G	G	Q	G	A	P	L	V	P	A	F	H	Q	Q
Template Known Secondary structure									G	G	G											.	.	.	.	.	.					T	T	S	S	S							S										S	S													T	T	S
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100							.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.															.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	N	R	L	T	Q	Q	L	V	L	A	A	Y	L	G	T	G	M	G	F	A	V	W	M	N	G	A	P	W	T	G	A	H	G	V	A	G	E	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	I	P	L	G	D	M	T	Q	H	C	A	C	G	N	P	G	C	L	E	T	N	C	S	G	M
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																													.	.	.	.																																							.	.
Template Sequence		T	F	A	Q	V	G	K	K	R	V	I	L	N	I	G	G	I	A	N	I	T	Y	L	P	G	N	S	.	.	.	.	E	E	V	L	G	F	D	T	G	P	G	N	T	L	I	D	A	W	V	Q	Q	V	K	N	E	S	Y	D	K	N	G	A	W	A	A	S	G	K	.	.	T	D	P	Q	L	L	A	Q	L
Template Known Secondary structure						T	T									S	S									S	S	S	.	.	.	.	S										S	S														S	S		G	G	G						S		.	.
Template Predicted Secondary structure																													.	.	.	.																																							.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.					.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.													.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		A	L	R	R	W	Y	E	Q	Q	P	R	N	Y	P	L	R	D	L	F	V	.	.	.	.	.	.	.	.	.	.	.	.	H	A	E	N	A	P	F	V	Q	S	L	L	E	N	A	A	R	A	I	A	T	S	I	N	L	F	.	D	P	D	A	V	I	L	G	G	G	V	M	D	M	P	A	F	P	R	E	T
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.																											.															.
Template Conservation																																																																											.
Template Sequence		L	S	H	P	Y	F	S	L	A	Y	P	K	S	T	G	R	E	L	F	N	Q	A	W	L	E	Q	Q	L	S	A	F	N	Q	L	N	E	E	D	I	Q	S	T	L	L	D	L	T	C	H	S	I	A	Q	D	I	L	K	L	A	Q	E	G	E	L	F	V	C	G	G	G	A	F	N	.	A	E	L	X	Q	R
Template Known Secondary structure			T		G	G	G	G	S		S	S					S	S	S	S	S								T	T	T		T	T	S																										S	S							S	G	G	G	G		.
Template Predicted Secondary structure																																																																											.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.					.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		L	V	A	M	T	Q	K	Y	L	R	R	P	L	P	H	Q	V	V	R	F	I	A	A	S	S	.	.	.	.	S	D	F	N	G	A	Q	G	A	A	I	L	A	H	Q	R	F	L	P	Q
Query Conservation																											.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	A	L	L	P	G	Y	.	.	.	.	.	.	.	.	.	.	R	I	D	T	T	S	A	L	G	V	D	P	K	W	A	E	G	I	A	F	A	W	L	A	X	R	Y	Q	L	G	L
Template Known Secondary structure							T	T		.	.	.	.	.	.	.	.	.	.					G	G	G	G	T			T	T	T															T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.											.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions